Sciurus carolinensis (gray squirrel): 124978854
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Entry
124978854 CDS
T08117
Name
(RefSeq) transcription factor SOX-9 isoform X1
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04024
cAMP signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04024 cAMP signaling pathway
124978854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124978854
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124978854
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
124978854
NCBI-ProteinID:
XP_047398689
LinkDB
All DBs
Position
3:complement(8284142..8288053)
Genome browser
AA seq
509 aa
AA seq
DB search
MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
SVKNGQAEAEEPTEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
NGHPGVPATHGQVTYTGSYGISSTAATSAGAGHGWMSKQQAPPPPPQQPPQAPQAPQAPP
QQQAAPPQQQQAPPQQQQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAY
SPFNLPHYSPSYPPITRSQYDYTDHQNSGSYYSHAAGQGSGLYSTFTYMNPAQRPMYTPI
ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctggaccccttcatgaagatgaccgacgagcaagagaagggcctgtccggc
gcccccagccccaccatgtccgaggactcggctggctcgccctgcccatcaggctccggc
tccgacaccgagaacacgcggccccaggaaaacacattccccaagggcgagccggacctg
aagaaggaaagcgaagaggacaagttccctgtgtgcatccgcgaggcggtcagccaggtg
ctcaagggctacgactggacgctggtgcccatgccggtgcgcgtcaacggctccagcaag
aacaagccgcacgtcaagcggcccatgaacgcctttatggtgtgggcgcaggcggcgcgc
aggaagctggccgaccagtacccgcacctgcacaacgctgagctcagcaagacgctgggc
aagctctggagactgctcaacgagagcgagaagcggcccttcgtggaggaagcagagcgg
ctacgcgtgcagcacaagaaggaccacccggattacaagtaccagccgcggcggaggaag
tcggtgaaaaatgggcaggccgaggccgaggagcccaccgagcagacgcacatctctccg
aacgccatcttcaaggctctgcaggccgactcgccgcactcctcctccggcatgagcgaa
gtgcactcccccggtgagcactcggggcaatcccagggcccaccgactccacccaccacc
cccaaaaccgacgtgcagccaggcaaggctgacctgaagcgagaggggcgccccctgcca
gagggaggcagacagccccccatcgacttccgcgacgtggacatcggcgagctgagtagc
gacgtcatctccaacatcgagaccttcgatgtcaatgaatttgaccagtacctgccgccc
aacggccacccgggggtgccggccactcatggccaggtcacctacaccggcagttacggc
atcagcagcaccgcggcgacgtctgccggcgctggccacgggtggatgtccaagcagcag
gcaccgccgccgcccccgcagcagcccccgcaggcccctcaagccccgcaggcacccccg
cagcagcaggcggcgcctccgcagcagcagcaggcgcccccgcagcagcagcaggcgcac
acgctgaccacgctgagcagcgagccggggcagtcccagcgaacccacatcaagacggag
cagctgagccccagccactacagcgagcagcagcagcactcgccgcagcagatcgcgtac
agccctttcaacctcccgcactacagcccctcctacccgcccatcacccgctcgcagtac
gactacaccgaccaccagaactccggctcttactacagccacgcggcgggccagggctct
ggtctctactccaccttcacctacatgaaccccgcgcagcgccccatgtacacccccatt
gccgacacctcgggggtcccgtccatcccgcagacccacagcccgcagcactgggaacaa
cccgtctacacacagctcaccagaccgtga
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