Sciurus carolinensis (gray squirrel): 124978948
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Entry
124978948 CDS
T08117
Name
(RefSeq) protein patched homolog 2 isoform X1
KO
K11101
patched 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04340
Hedgehog signaling pathway
ncar05200
Pathways in cancer
ncar05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124978948
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124978948
09162 Cancer: specific types
05217 Basal cell carcinoma
124978948
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
124978948
NCBI-ProteinID:
XP_047398894
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Position
1:175234849..175258438
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AA seq
1197 aa
AA seq
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MAQPPPLGELPPGYISPARPTAPQILAGSLKTPLWLRAYFQGLLFSLGCGIQKHCGKVLF
LGLLAFGALALGLRVAVIETDLEQLWVEVGSRVSQELHYTKEKLGEEAAYTSQMLIQTPR
QEGENILTPEALGLHLQAALTASKVQVSLYGKSWDLNKICYKSGVPLIENGMIERMIEKL
FPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDPEQLLEELGPFVSLEGFRQLLDK
AQVGQAYVGRPCLDPDDLHCPPSAPNHHNRQAPNVAQELSGGCHGFSHKFMHWQEELLLG
GMVRDPQGRLLRAEALQSTFLLMSPRQLFEHFRGDYQTHDIGWSEEQASRVLQTWQRRFV
QLAQEALPENASQQIHAFSPTTLDDILHAFSEVSTARVVGGYLLMLAYACVTMLRWDCAQ
SQGAVGLAGVLLVALAVASGLGLCSLLGITFNAATTQVLPFLALGIGVDDIFLLAHAFTE
APPGTRLQERMGECLQRTGTSVALTSINNMIAFFMAALVPIPALRAFSLQAAIVVGCNFT
AVMLVFPAVLSLDLHRRHCQRLDVLCCFSSPCSARVIQILPQELGDRTVPVGIAHLTTTV
QAFTHCEASSQHVVTILPPQAQLVPPPSDPLSSELFSPVGSTRDLLGQEEGIRPKAARKS
LPCARWNLAHFARYQFAPLLLQTHAKAMVLMFFGALLGLSLYGATLVQDGLALTDVVPRG
TKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRT
WLHYYRNWLQGIQAAFDQDWASGRITYHSYRNGSEDGALAYKLLIQTGNAQEPLDFSQLT
TRRLVDKEGLIPPELFYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIP
AAQPLEFAQFPFLLRGLQKTADFVEAIQGARAACTEAGQAGVHAYPSGSPFLFWEQYLGL
RRCFLLAVGILLVCTFLVCALLLLNPWMAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVV
ILVASVGIGVEFTVHVALGFLTTQGSRNLRAAHALEHTFAPVTDGAVSTLLGLLMLAGSN
FDFIIRYFFVVLTVLTLLGLLHGLVLLPVLLSILGPPPEVVQMYKESPQVLSPATPRGGT
LRWGVTPTLPQNFARVTTSMTVALHPPPLPGAYIHPTSTEPIWSPAVTPAANSSATE
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggctcagccaccgcctctcggagagctgccacctggctacatatccccagctcgaccc
acagcacctcagatcctagctgggagcctgaagactccactctggcttcgtgcttacttc
cagggcctgctcttctctctgggctgcgggatccaaaaacactgtggcaaagtgctcttc
ctgggactgttggcctttggggccctggcgctgggtctccgtgtggccgttattgagaca
gacctggaacagctctgggtagaagtgggaagccgggtgagccaagagttgcattatacc
aaggagaagctgggggaggaggctgcatatacctcccagatgttgattcagactccacgc
caggagggggagaacatcctcacgcccgaggcacttggcctccacctccaggcagccctc
actgccagtaaagtacaagtatcactctatggaaagtcctgggatctgaacaaaatctgc
tacaagtcgggagttccccttattgaaaatggaatgattgagcggatgattgagaagctg
tttccatgtgtgatcctcaccccactcgactgcttctgggagggagccaaactccaaggg
ggctctgcctacttgccgggccgccctgatatccagtggaccaacctggacccagagcaa
ctgctggaggaactaggtccctttgtctccctggaaggctttcggcagctgctagacaag
gcacaggtgggccaggcctatgtggggcggccctgtctggatcctgatgacctccactgc
ccacctagtgcccccaaccatcacaacaggcaggctcccaatgtggctcaggagctgagt
gggggctgccatggcttctcccacaaattcatgcattggcaggaggaattgctgttggga
ggcatggtcagagacccccaaggacggctgctaagggcagaggctctgcagagcaccttc
ctgctgatgagtccccgccagctgttcgaacacttcaggggcgactatcagacacatgac
atcggctggagtgaggagcaggccagcagagtgctgcaaacctggcaacggcgcttcgtg
cagctggctcaggaggccctgcctgagaacgcatcccagcagatccacgccttctcccct
accaccctggacgacatcctgcacgcattctctgaagtcagcacggcccgtgtggtggga
ggctatctgctgatgctggcctatgcctgcgtaaccatgctgcgatgggactgtgcccag
tctcagggtgccgtgggccttgctggggtgttgctggtggccctggcagtggcctctggc
cttgggctctgctccctgcttggcatcaccttcaatgctgccactactcaggtgctaccc
ttcttggcattgggcattggtgtagatgacattttcctgctggctcatgccttcacagag
gctcctcctggtacccgtctccaggagcgcatgggcgagtgtctgcagcgcacaggcacc
agtgttgccctcacatccatcaacaacatgattgctttcttcatggctgccctagttccc
atccccgcactgcgagccttctccctgcaggctgccatagtagtgggctgcaacttcaca
gccgtgatgctcgtcttcccggctgtcctcagcctggacctgcaccggcgccactgccag
cgccttgatgtgctctgctgcttctctagcccctgttctgctcgagtgattcagattctg
ccccaggagctgggggataggacagtgccagtgggcattgcccacctgaccaccacagta
caagctttcacccactgtgaagccagcagccaacacgtggtcaccatcctgcctccccaa
gcccagctggtacccccaccttctgatccactgagctctgagctcttcagccctgttggg
tccacacgggaccttctaggacaagaggaggggataaggccaaaggcagcccgcaagtcc
ctaccctgtgcccgttggaatcttgcccatttcgcccgctatcagtttgcacccctgctg
ctccagacacatgccaaggccatggtgctgatgttctttggggctcttctgggcctgagc
ctctatggagccaccttggtgcaggatgggctggccctgacagatgtggtgcctcggggc
accaaggaacatgccttcctgagcgcccagctcaggtacttctccctgtacgaagtagcc
ctggtgacccagggtggctttgactacgctcactcccaacgtgccctctttgatctgcac
cagcgcttcagttccctcaaggctgtactgcccccgcctgccacccaggcaccccgcacc
tggctgcactattaccgcaactggctacagggaatccaggctgcatttgaccaggactgg
gcttctgggcgcattacctaccattcataccgtaatggctctgaggatggggccctggcc
tacaagctgctcattcagactgggaatgcccaggagcctctggatttcagccagctgacc
acaagaaggctggtggacaaggagggactgattccaccagagctcttctacatggggtta
actgtgtgggtgagcagtgaccctctgggtctggcagcctcacaggccaacttctacccc
ccacctcctgaatggctacatgacaaatatgacaccactggggagaaccttcgcatccca
gcagcccagcccctggagtttgcccagttccccttcctactgcgtggcctccagaagact
gcagactttgtagaggccatccagggggcccgggcagcatgcactgaggcaggccaggca
ggggtgcacgcctaccccagcggctcccctttcctcttctgggagcagtacctgggcctg
cggcgctgcttcctgctagctgttggcatcctgctggtgtgcaccttcctggtctgtgcc
ctgctgctactcaacccctggatggctggcctcatagtgctggtcctggcaatgatgact
gtggaactctttggtatcatgggtttcctgggcatcaagctgagtgccatccctgtggtg
atcctcgtggcctctgtaggaattggtgtcgagttcacagtccacgtggctctgggtttc
ctgaccacccagggtagccggaacctgcgggctgcccatgcccttgagcacacatttgcc
cctgtgactgatggggccgtctccacgttgctgggcttgctcatgcttgctggttccaac
tttgacttcatcataaggtacttcttcgtggtgctgacagtgctcacactcttgggtctc
ctccatggactcgtgctgctacctgtgctactgtccatcctgggccccccaccagaggta
gtacagatgtataaggagagcccacaggtcctgagtcctgcaactccacggggaggcaca
ctcagatggggggtgactcccaccctgccacagaactttgccagagtgactacctccatg
actgtggccttgcacccacccccactacctggtgcctatatccacccaacctctaccgag
cccatatggtctcctgctgtcaccccagctgccaacagctctgccactgagtga
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