Sciurus carolinensis (gray squirrel): 124979133
Help
Entry
124979133 CDS
T08117
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04371
Apelin signaling pathway
ncar04613
Neutrophil extracellular trap formation
ncar05034
Alcoholism
ncar05203
Viral carcinogenesis
ncar05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
124979133
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
124979133
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
124979133
05203 Viral carcinogenesis
124979133
09165 Substance dependence
05034 Alcoholism
124979133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124979133
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124979133
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124979133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Oxidored_nitro
Motif
Other DBs
NCBI-GeneID:
124979133
NCBI-ProteinID:
XP_047399381
LinkDB
All DBs
Position
3:complement(181308444..181563660)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVASALPLQVAPSAVPMDLRLDHQFSLP
VAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLA
MKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVL
NKKKALAHRNLNQCMSSDPRYWYGKTQHSSLDQSSPPQSGVSASYNHPVLGMYDAKDDFP
LRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGP
SSPNSSSGNVSTENGIVPTVPSVPAETSLAHRLVAREGSVAPLPLYTSPSLPNISLGLPA
TGPAAGAAGQQDAERLALPALQQRIPLFPGTHLTPYLSASPLERDSGAAHNPLLQHMVLL
EQPPAQASLVTDWYLSGLGALPLHAQPLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQ
ALQHLVIQQQHQQFLEKHKQQFQQQQLHMNKIIPKPSEPARQPESHPEETEEELREHQAL
LDEPYLDRLPGQKEAHSLAAVQVKQEPIESDEEEAEPTREAEPGQRPPTEQELLFRQQAL
LLEQQRVHQLRSYQASLEAAGIPVSFSSHRPLSRAQSSPASATFPVSVQEPPPKPRFTTG
LVYDTLMLKHQCACGNTNSHPEHAGRIQSIWSRLQETGLRSKCECVRGRKATLEELQTVH
SEAHALLYGTNPLNRQKLDSKKLLGSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAV
GCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAARLLQQRLSVSKIL
IVDWDVHHGNGTQQAFYSDPGVLYVSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFT
GGLDPPMGDTEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYTLSAKCFGY
LTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLQQRPNANAVR
SMEKVMEIHSKYWRCLQRLSSTAGRSLIEAQKCDNEEAETVTAMASLSVGVKPTEKRPDE
EPMEEEPPL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccaaagccatccagatggactttctggccgagaccagccagtggagctgctg
aatcctgcccgtgtgaaccacatgcccagcacggtggacgtggcctcagcactgcctttg
caagtggccccctcggcagtgcccatggacctgcgcctggatcaccagttttcactgccc
gtggctgagccagcactacgggagcagcagctccagcaggagctcttggcgctgaagcag
aagcagcagatccagcggcagatcctcattgctgagttccagcggcagcacgagcagctg
tcccggcagcacgaggctcagcttcatgagcacataaagcagcagcaggagatgctggcc
atgaagcaccagcaggagctgctggagcaccagcgcaagctggagaggcaccggcaggag
caggagctggagaagcagcaccgggagcagaagctgcagcagctcaagaacaaggagaag
gggaaggagagtgccgtggccagcacagaggtaaagatgaagctgcaggagtttgtcctc
aataagaagaaggcgctggcccaccgcaacctgaaccagtgcatgtccagcgacccccgc
tactggtatgggaagacgcagcacagttctcttgaccagagttctccgccccagagcggg
gtgtcggcctcctacaaccacccggtcctgggaatgtatgacgccaaagacgacttccct
cttaggaagacagcttctgaacccaacctgaaattgcggtccaggcttaagcagaaagtg
gctgagagacggagcagccctctcctgcgcagaaaagatgggcctgtggtcactgctcta
aaaaagcgtcccctggatgtcacagactctgcatgcagcagtgccccaggatctgggccc
agctcacccaacagcagctctggcaacgtcagcactgagaatggcatcgtgcccactgtg
cccagcgtcccggccgagaccagcttggcacacagactggtggcccgggaaggctcagtc
gccccgctccccctctacacgtcgccctccttgcccaacatctccttgggacttcctgcc
actggccctgctgctggtgcagcaggccagcaggacgccgagcgactggctctcccggcc
cttcagcagcggatccccctcttccccggcacccacctcaccccctacctgagtgcctcc
cctctggagcgggacagtggggcggctcacaaccctcttctacagcacatggtcctgctg
gaacagccccctgcacaggcgtccctcgtcacagactggtatctttcaggcctgggagcg
ctgcccctccacgcacagcccctggttggtgccgaccgggtgtccccgtccattcacaag
ctgcggcagcaccgcccgttggggcgcacgcagtcggcaccactgccgcagaacgcgcag
gcgctgcagcacctggtgatccagcagcagcaccagcagttcctggagaagcacaagcag
cagttccagcagcagcagctgcacatgaacaagatcatccccaagcccagcgagccggcc
cggcaaccagagagccaccctgaggagacggaggaggagctccgggagcatcaggccctg
ctggacgagccctatctggaccggctcccagggcagaaggaggcacactcgctggctgct
gtacaggtgaagcaggagcccatcgagagcgacgaggaggaggcggagcccacacgggag
gcggagccaggccagcgtccccccaccgagcaggagctgctcttcagacagcaagctctc
ctgctggagcagcagcgtgtccaccagctgagaagctaccaggcgtccctggaggccgcg
ggcatccctgtgtccttcagcagccacaggcctctgtcccgagcacagtcctcccccgcc
tcggccaccttccctgtgtctgtccaggagccaccccccaagccaaggttcaccacaggc
ctcgtgtacgacaccctgatgctgaaacaccagtgtgcctgtgggaacaccaacagccac
cccgagcacgcagggaggatccagagcatctggtcccgcctgcaggagacgggcctccgc
agcaagtgtgagtgcgttcgtggacggaaggccacactggaggagctgcagacggtgcac
tcggaggcccacgccctgctgtacggtacaaacccgctcaacaggcagaagctggacagt
aagaaacttctaggctccctgacctccgtgtttgtcaggctcccttgcggtggtgttggg
gtggatagtgacactatatggaatgaggtgcactcgtcaggggcggctcgcctggccgtg
ggctgtgtggtggagctggtcttcaaggtggccacgggagagctgaagaatggctttgct
gtggtccgccctccaggacaccatgctgaggagagcacacccatgggcttctgctacttc
aactccgtggcggtggcggccaggctgctccagcagaggctgagtgtgagcaagatcctc
atcgtggactgggatgtgcaccacgggaatgggacccagcaggccttctacagcgaccct
ggtgtcctctacgtgtccctgcaccgctacgacgacgggaacttcttcccgggcagcggg
gcccccgacgaggtgggcacagggccaggcgtgggcttcaacgtcaacatggctttcacg
ggtggcctcgacccccccatgggagacacagagtacctggcagccttcaggactgtggtc
atgccgatcgcaaacgagtttgccccagacgtggtgctcgtctcatcgggcttcgacgcc
gtggagggccaccccacgcctctcggagggtacaccctctccgcaaagtgtttcgggtac
ctgacgaagcagctgatgggcctggctggtggacgagtcgtgctggccctggagggaggc
cacgacctgaccgccatctgcgacgcctctgaggcctgcgtgtctgccttgctgggaaac
gagctcgagcctctaccagaaaaggtgttacagcagagacccaatgccaacgctgtgcgc
tccatggagaaggtcatggagatccacagcaagtactggcgctgcctccagcgcctgtcc
tccacggcggggcgttctctgatcgaggcacagaagtgtgacaacgaagaagcagagacg
gtcaccgccatggcctcgctatccgtgggtgtaaagcccacagagaagaggcctgacgag
gagcccatggaggaggagccgcccctgtag
DBGET
integrated database retrieval system
