Sciurus carolinensis (gray squirrel): 124979580
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Entry
124979580 CDS
T08117
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124979580
03036 Chromosome and associated proteins [BR:
ncar03036
]
124979580
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124979580
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124979580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
124979580
NCBI-ProteinID:
XP_047399907
LinkDB
All DBs
Position
3:complement(64573939..64606606)
Genome browser
AA seq
1726 aa
AA seq
DB search
MSDFVESEAEESEEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFIND
DDDEDDGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRR
VKKMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESD
IDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEY
EYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQL
RSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPTSSFSRKGPSTIQKIK
EALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPRMQN
AAKASRKKLKRVREEGDEEGEGEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREP
LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKIGLAE
DEGLLTIDISIDMKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQF
LYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIR
VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
LNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSE
AEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYC
EFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTM
CHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTA
YRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
MTVHCRIMKIDIEKFSADLTCRTSDLVDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ
QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQH
VDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
KKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQI
FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPS
YSYTTPSQPITTPQYHQLQASTTPQSAQTQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgtggaaagtgaggctgaggagtcagaagaagaatacaatgatgaaggc
gaagtggtgccccgagtcaccaagaaatttgtggaagaggaggatgatgatgaggaggag
gaggaggagaatctagatgatcaagatgaacaaggcaatttgaaaggctttatcaatgat
gatgatgatgaagatgatggggaagaggatgaaggcagtgactctggtgattctgaagat
gatgttggccacaagaagagaaaacgcacatcttttgatgaccgcctggaggatgatgat
tttgacctcattgaggagaatttgggtgtcaaagtgaaacgaggccaaaagtaccggcgt
gtcaaaaaaatgtcagatgatgaggacgatgacgaagaggaatatggcaaggaagaacat
gaaaaagaggctattgcagaggaaatattccaggatggggaaggggaagaaggacaggaa
gctatggaggcccccatggctcctccagaggaggaagaggaagatgatgaagagtcagat
attgatgatttcattgtggatgatgatggacagcctctgaaaaaacccaagtggcggaaa
aaacttcccggatacacagatgcagccctgcaagaagcccaggagatttttggtgtggat
ttcgattatgatgaatttgagaaatacaatgagtatgatgaagaacttgaggaagagtat
gagtatgaggatgatgaggccgaaggtgaaatcagagtgcgccccaagaagaccaccaag
aagcgtgtgagccgcaggagcatctttgagatgtacgagcccagtgagctggaaagcagc
caccttacagatcaggacaacgaaatccgagccactgacctgcctgagaggttccagctc
cgctccatcccagtcaagggggcggaagatgatgaattagaagaagaagctgactggatc
tacaggaatgcctttgcaacaccaaccatttctctacaggaaagctgtgattacctagac
agagggcaaccaaccagcagcttcagtcgaaaagggcccagtacaattcagaagattaaa
gaagccctgggcttcatgcgaaatcagcattttgaggtgccttttattgccttctaccga
aaggagtatgtggagcctgagttgcacatcaatgacctgtggagagtgtggcagtgggat
gaaaagtggacccagttgaggatccgcaaagagaacctaacacgactgtttgagaagatg
caagcttatcaatatgagcaaatctctgctgaccctgacaaacctcttgctgatggcatc
cgggctctggacaccactgacatggagaggctcaaggatgtacaatcaatggatgagtta
aaagatgtctataatcatttcctgctttactatggccgtgatatccccaggatgcagaat
gctgccaaggctagccgcaagaagctaaagcgtgtaagggaagagggagatgaagaaggt
gaaggtgaagaggccgaagacgaggagcagaggggtccagagctcaagcaggcctcccgc
cgagacatgtataccatttgccaaagcgcagggctagatggcctggccaaaaagtttgga
cttactcctgagcaatttggggagaacctccgggacagctaccagcggcatgagacagag
cagttccccgcagagcctttggagctggccaaagattatgtttgcagccaatttcctact
ccagaagccgtgctggaaggtgcccgctacatggtagcactacagattgcacgtgagccc
cttgtccggcaggtgctgaggcaaaccttccaggagagagccaagctaaatataacccct
accaagaaaggtagaaaggatgtggatgaggcccactacgcttattcctttaagtactta
aagaacaagcctgttaaagaactgagagatgaccagttcctcaagataggcctggcagaa
gatgaagggctactcaccattgacatcagcatagatatgaagggagtagaaggctatggc
aatgaccagacatactttgaagagattaaacagttttactaccgagatgagttcagccac
caggttcaggagtggaaccggcaacgcaccatggccattgaacgagcattacagcagttc
ctctatgtgcagatggctaaggagctcaagaataagctgctagctgaggccaaggaatat
gtcataaaggcctgtagccgaaagctctacaactggttgagagtggcgccctaccgacca
gatcagcaggtagaggaagatgatgacttcatggatgagaaccaagggaaaggcattaga
gttctaggcattgctttctcctctgccagagatcaccctgtgttctgtgctctggtcaat
ggtgaaggagaagtgacagacttcctccggctgccccattttaccaaacggcgaactgcc
tggagagaggaagagcgggaaaagaaggctcaagacattgaaacccttaagaaatttctt
ctgaacaagaagcctcacgtggtgacagttgcaggagagaacagggatgcccaaatgttg
attgaggatgtgaagcgcattgtgcatgagctggaccagggccaacaactgtcttctatt
ggggtggagctggttgacaacgaattggccattctctatatgaacagcaagaagtcagag
gcagagttccgggattaccctcctgtactgagacaggcagtctctctggctcggcgcatc
caagaccctctgatagaatttgctcaagtgtgcagctctgatgaagacatactgtgtctc
aagtttcaccccttgcaggaacatgttgtgaaagaggaactgctgaacgccttgtactgt
gaatttatcaaccgggtcaatgaagtcggggtcgatgtcaaccgtgccattgcacatcct
tacagccaggctttgatccagtatgtctgtggcctgggacctcgtaaagggactcatctc
ctgaagatcctgaagcagaacaacacgcgccttgaaagccggacccagctggtcaccatg
tgccacatgggtcccaaagtcttcatgaattgtgctggcttcctcaagattgacacagcc
tccctgggggacagcactgactcatacattgaagtccttgatggttctcgtgttcaccct
gagacctatgagtgggccaggaagatggccgtagatgccctagaatacgatgaatcagct
gaggatgccaatcctgcaggagcccttgaagaaatcttggaaaatccagagcgactcaaa
gacctggacctcgatgcctttgcagaagagctggagagacagggctatggcgacaaacac
atcacgttatatgacatccgggcagagctaagctgtcggtacaaggacctccgaacagcc
taccgctctcccaacacagaagagatcttcaatatgttaaccaaagaaacaccagagact
ttctacattggaaagctcatcatctgcaatgtcactggcattgctcacaggcgtccacag
ggtgaaagctatgaccaggccatccgcaatgatgagacaggactgtggcagtgccccttc
tgtcagcaggacaatttccctgaactaagcgaggtctggaaccactttgacagtggttca
tgcccgggccaggccattggtgtcaaaacacggctagacaatggtgtcactggcttcatc
cccaccaaattcctcagtgacaaagtggtaaagcggccagaggagcgagtgaaggtggga
atgactgttcactgccgcatcatgaagattgacattgagaagttcagtgcagacttgacc
tgtcgtacctcagaccttgtggacaggaacaatgagtggaaactgcccaaggacacttac
tatgactttgatgctgaagcagcagaccacaagcaggaggaggacatgaaacggaagcag
caacggaccacatacatcaagcgagtgattgcacacccatctttccataatatcaatttc
aaacaagcagaaaagatgatggagaccatggatcagggtgacgtgatcatccggcctagc
agcaagggtgagaaccacctgacagtgacctggaaagtcagtgatggcatctaccagcat
gtggatgtgcgggaggagggcaaggaaaatgccttcagccttggagccactctgtggatc
aacagtgaggaatttgaagacttggatgagattgttgcccgctatgtccagcccatggcg
tcctttgcccgggaccttcttaaccacaagtattaccaggattgcagtggtggggaccgc
aagaaattagaggagctgctcatcaaaactaagaaggagaagcccaccttcatcccttat
ttcatctgtgcctgcaaggaactgcccggcaagttcctcctgggataccagccccggggt
aaacccaggatagaatatgtaacagtgactcctgaaggattccggtaccgagggcaaatt
ttcccaactgtgaatggactctttagatggtttaaggatcattaccaggatcctgtacca
ggtatcaccccaagtagcagcagcagaacaaggacacctgcctctatcaatgctacccct
gccaacatcaaccttgcagatctgacacgagctgtgaatgccctgccccagaacatgact
tcgcagatgttcagtgccattgctgctgtgacaggacagggacagaaccctaatgccacc
ccagcccagtgggcctccagccagtatggctatggaggcagtggagggggcagcagcgct
taccatgtattcccaacaccagctcagcagccagtggccacaccactaatgacccccagc
tactcctacacaaccccgagccagcccatcaccacaccacagtaccaccagctccaggcc
agcaccaccccacagtctgcccagacccagccccagccctcttccagctcccggcaacgg
caacagcagccaaagtccaacagccatgcagccatcgactgggggaagatggcagagcag
tggctacaggagaaggaagcagaacggcggaaacagaagcagcggttgacacctcggccc
tccccaagtcccatgatcgaaagcacccccatgtccattgctggcgatgccaccccgctc
ctggacgagatggatcgatag
DBGET
integrated database retrieval system
