Sciurus carolinensis (gray squirrel): 124979677
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Entry
124979677 CDS
T08117
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124979677
09122 Translation
03013 Nucleocytoplasmic transport
124979677
03015 mRNA surveillance pathway
124979677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124979677
03041 Spliceosome [BR:
ncar03041
]
124979677
03009 Ribosome biogenesis [BR:
ncar03009
]
124979677
03012 Translation factors [BR:
ncar03012
]
124979677
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124979677
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124979677
mRNA cycle factors
Stress granule specific factors
124979677
Spliceosome [BR:
ncar03041
]
Complex C
Other components
EJC/TREX
124979677
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
90S particles
Helicases
124979677
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
eIF-4
124979677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124979677
NCBI-ProteinID:
XP_047400166
LinkDB
All DBs
Position
3:2394587..2404626
Genome browser
AA seq
411 aa
AA seq
DB search
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcggctacggccacgatggcgacctcgggctcggcgcggaagcgtctgctcaaagag
gaagacatgaccaaagtggagttcgagaccagcgaggaggtggacgtgacgcccacgttc
gacaccatgggcctgcgggaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccatcagcaatccaacagcgagctatcaaacagataattaaagggagagatgtcattgca
cagtcccagtctggcacaggcaagacagccaccttcagtatttcagtcctccagtgttta
gacattcaggttcgagaaacccaagctttgatcttagctccaacaagagagttagctgta
cagattcagaagggtctgcttgctctgggagactacatgaatgtccagtgccatgcctgc
attgggggcaccaatgtcggggaggacatccggaagctggactacgggcagcatgttgtg
gcaggcactcccgggcgtgtctttgatatgattcgtcgcaggagtttaaggacacgtgca
atcaagatgctggttttggatgaggctgatgagatgttgaataaaggtttcaaagagcag
atttatgatgtgtaccggtacctgcctccagccacacaagtggtcctcatcagtgccact
ctgccccacgagatcctggagatgaccaacaagttcatgacagaccccatccgcatcctg
gtgaagcgtgatgaattgactctggaaggcatcaaacagttttttgtggcagtggaaaga
gaggagtggaaattcgacaccctgtgtgacctctatgacacgctgaccatcacccaggcg
gtcatcttctgtaacaccaagaggaaggttgactggctgacagagaaaatgagggaagcc
aatttcaccgtgtcttccatgcacggagacatgccccagaaggagcgggaatccattatg
aaggagttccggtccggtgccagccgagtgctcatttccacagacgtctgggcccggggg
ctggatgtcccccaggtgtccctcatcatcaactatgacctgcccaacaacagggagctg
tacatacacagaatcgggagatctggtcgatacggcaggaagggtgtggccatcaatttt
gtgaagaatgacgacatccgcatcctcagagacatcgagcagtactactccactcagatc
gatgagatgcctatgaatgttgctgacctgatctga
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