Sciurus carolinensis (gray squirrel): 124979739
Help
Entry
124979739 CDS
T08117
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124979739
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
124979739
3'-5' decay
Other 3'-5' decay factors
124979739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PAM2
PhoH
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
Bac_DnaA
AAA_16
AAA_7
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
124979739
NCBI-ProteinID:
XP_047400307
LinkDB
All DBs
Position
3:complement(13197958..13349512)
Genome browser
AA seq
1943 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYDMALKHCTEALLSLGQYSMADFTGPCPLEIERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGEGAFRTVLCCMQLKGKLQPVSTILARSLT
GESLNGMVTKDLTRLKTLLMETETATSNVLSGYHVEDFDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGVKVEHSPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KEKLAQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQHETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKSTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNSNKQQQSPPKGKSLHHTQND
HFQNDGIVPPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPIPYGLGHHPPV
SIGQPQNQHLEKDQNEQNRNGKSDTNNAGPEINKIRTPEKKPAEPKQVDLESNPQNRSPE
SRPGVVYPNTKFPRKDNLNPRHINLPLPAPHAQYAIPNRHFHPLPQLPRPPFPIPQQHTL
LNQQQNNLSEQPNQMPPQPNQVVQQPSQLTPQAQQPPPQLSPAYQPGPNSAFFNNAVSHR
PQSPPAEAVISEQQPPPMLQEGHSPLRAIAQPGPILPSHLNNFIDENPPGLPTGEALDRI
HGNVALETLRQQQARLQQWNEHHAYLSQGGIAYPHHHHPHLQHLPQPPIGLHQPPVRADW
KLTSSTEDEAETTFSRFQDLIRELSHRDQSETRELAEMPPPQSRLLQYRQVQARSPPAVP
SPPSSTDHSSHFSNFNDNSRDIEVANNPAFPQRLPPQIFSSPFSLPSEHLAPPPLKYLAP
DGAWTFANLQQNHLIGPGFPYGLPPLPHRPPQNPFVQIQNHQHAVGQEPFHPLSSRTVSS
SSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSAPPDSLAPCKELQDHGDPPSFSFS
APESWANATSSAPYQNIPCNGSSRTAQPRELIAPPKTVKAPEDPLKSENLEVSSSFNYNM
LQHLGQFPPLMPNKQIAESANSSSQQSSAGSKPAMSYASALRAPPKPRPPPEQAKKSSDP
LSLFQELSLGSSSGSNGFYSYFK
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgaaaagtcatgtgaacaagcatgtgagtcactgaagaggcag
gactatgacatggccctcaagcactgcaccgaggccctcctttctctcggccagtactcc
atggcagacttcacagggccatgtccactggagatagaacgcatcaaaatcgagagtctt
ctttacagaattgcctcatttttgcaactgaaaaactatggacaagctgatgaagattgt
aggcacgtgctgggagaaggactggccaagggagagggtgcctttcggacagtgctttgc
tgcatgcagctgaaaggaaagctccagcctgtatccaccatccttgccaggtcactgacg
ggagagtccctgaatgggatggtaacaaaagatttgacaagattaaaaactcttctcatg
gaaacagagacagcaactagtaacgtcctctctggatatcatgtggaagacttcgatgaa
gggtcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagagcaaggaatctgtaggtatggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaaaagatatgcttcacggttgata
aaattgaaacagcaaaatgagaataaacagctctcaggcagttacatggaaaccttgata
gaaaagtggatgaattcattatctcctgagaaagtgcttagtgaatgtatagaaggagta
aaggtggaacatagtcctgacctgtcagttactgtcaacaccaaaaagtctcaccagacg
tggacctttgctctcacttgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatatctgatgcatgcaaaacaacagctagta
accacagctaagcgttgggattcttcttctaagactattatagattttgaacctaatgaa
actactgatttggagaagagccttcttatcagataccaaattcctctgtctgctgaccag
ctatttacccagtcggttttagacaaatcattgaccaagaccaactatcagtcccgtttg
catgatcttctttatattgaggagatagcccagtataaagaagtcagcaagttcaacctt
aaagtgcaattgcagattctagcaagcttcatgctcactggagtttctggaggtgcaaag
tatgctcagaatggacagctttttggtcgttttaagcttaccgaaacactttctgaagat
actttggctggacgactggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagttagcacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagaatatatatttttaaggatatccagggaatgctgtgaagaacttaac
cttcgacctgactgtgacacacaggttgaactccagttccagttaaatcgattacccctc
tgtgaaatgcactatgcactagacaggatcaaggacaatggcgtcttgtttccagacatc
agcatgactcccaccatcccgtggagtcccaacagacaatgggatgaacagttggatcct
cgactaaatgcaaaacagaaagaagctgttctggccattaccactccactttccatccag
ctgccacctgtcctcatcatcggaccctatgggacaggcaaaacgttcacgctagctcag
gccgtgaagcacatactgcagcagcatgagactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtttatttccgaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaaa
gaagatattctcaaacatcgagtggtggtggttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacgcacattttgctagatgaagctgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactaaaagtacccggattgttttg
gctggtgatcacatgcagctcagtccttttgtttacagcgaattcgccagggaaagaaac
cttcatgtttcattacttgatcgactctatgagcattaccctgcagagtttccatgtagg
atcctcctgtgtgagaactaccgctcccatgaagctatcatcaattatacctctgagctt
ttctatgagggtaaactgatggccagtggaaagcaaccagcacacaaggatttctaccca
ttaacgttttttacagcccgaggggaagatgtgcaagaaaaaaatagcacagcattttat
aataatgcagaggtatttgaagtggtagaacgtgtagaagagttaagaagaaagtggcca
gtagcgtggggaaagttggatgatggcagtattggtgtggtgactccatatgctgatcag
gtgttcaggatacgtgctgaacttcgaaaaaagagattatctgatgttaatgtggaaaga
gtgctaaatgttcaaggaaaacaattcagagttttgtttcttagcacagtacgtacaaga
catacttgtaagcataaacaaacaccaattaaaaagaaagagcaacttctggaagattcc
acagaggacctagattatggttttttatctaactacaagcttctcaacactgccatcaca
agagcgcagtccctggttgctgtggtgggagatcccattgctctgtgttctattggaaga
tgcaggaagttttgggagcggtttatcgccctgtgtcatgaaaataacagtctacatggg
atcacatttgaacagatcaaagctcagttagaggctttagaactaaagaagacatatgtg
ttgaacccgttggctcctgagtttattccccgggcgctaagactgcaacattcaggaaat
agcaacaaacagcagcaatcaccacccaagggaaaaagcctccaccatacccagaatgat
catttccaaaatgatggaattgttcctcccaatccttctgtactgattggcaatcctatt
agagcatatactcctccaccccctcttggacctcacccaaatttgggaaaatctccgagc
cctgttcaaagaatagatcctcacactgggacaagtattctttatgtacctgctgtctat
ggaggaaatgtagttatgtcggtgcctttacctgtaccatggacaggataccagggtagg
tttgcagttgatcctcgaattattacacatcaggcagcaatggcctacaatatgaatcta
ttacacacacatggacggggatctcctataccttatggccttggacatcatccacctgtc
agcatagggcagccacagaatcagcatctggagaaggatcagaatgaacaaaatcgaaat
ggtaaaagtgatacaaataatgctggacctgaaattaataagattcgaacaccagagaaa
aagcctgcagaaccaaaacaggttgatttggaatcaaatccacagaacagaagtcccgaa
tcacgtcctggtgttgtttatcccaataccaaatttcctcgcaaagataatctcaaccca
agacacataaatcttcctcttcctgctccacacgcacagtatgcaatccctaatcgccat
tttcatccccttccccagctaccaagaccaccatttccaattccacagcagcacactttg
ttaaatcagcaacagaataatttgtctgaacaaccaaatcaaatgccaccccaaccaaat
caggtggtccagcagccaagtcagttgactccgcaggcccagcagccacctcctcagctt
tctcctgcatatcagccaggacccaacagtgctttttttaataatgcagtttctcatcga
ccacagtctcctcctgcagaggctgtgatctctgagcagcagccccctcccatgctacag
gaaggccacagtcctctgagagccattgcacagcctggccccatccttccttcacatcta
aataacttcattgacgagaatcccccaggattacctacaggagaggctttagatcgtata
catgggaatgtagctctagaaacattaaggcagcagcaggcacgactacagcaatggaat
gagcaccacgcctacctgagtcagggcggcattgcatacccgcaccaccaccaccctcac
ctccagcaccttcctcagccacccatcggactccatcagccaccagtgagggcagactgg
aagctcaccagcagtaccgaagatgaagcagaaacgacattctccaggtttcaagactta
atcagagagctgtctcatcgtgatcaaagtgaaactcgagaactagctgaaatgccacca
cctcaatcaagacttttgcaatatagacaagttcaggctagaagcccaccagcagtccca
tctcccccatccagtacagaccacagtagccacttttctaactttaacgacaacagcaga
gacattgaagtagccaacaacccagcatttccgcagcgccttcctccccagatattcagc
tcacccttctcgttgccatctgaacaccttgcccctcctcccttgaaatacctggcacct
gatggagcatggacttttgctaacttgcaacagaatcacttaatagggccaggctttccc
tatggcctacctccattgcctcacaggccaccgcagaacccttttgtacaaatacagaat
caccaacatgctgtcggtcaagagccatttcacccattgtcatctcgaacagtatcatct
tcttcgctcccgagcttagaagagtatgaacccagaggacctggtcggcccttgtaccaa
agaagaatctcatctagctcagtccagccttgttctgaagaagtaagtgctcccccagac
agcctggcgccgtgtaaagagctgcaggaccacggcgacccaccttctttcagcttctca
gccccggagtcctgggcgaatgccacctcatcagccccctaccagaacattccgtgcaat
ggatccagcaggacagctcaacccagagagttgatagctccacctaagactgtcaaagcc
cccgaggatccgctgaagtctgaaaacctggaggtgtccagttccttcaactataacatg
ctgcagcatctcggccagttcccgcccctcatgcccaacaagcagattgcagagtcggcc
aacagcagcagccagcagagctcggcaggcagcaagccagccatgtcctacgccagcgcg
ctgcgggcgccccccaagccccggcccccacctgagcaggccaagaagagcagcgacccc
ctgtctctgttccaggagctcagcttggggagctcctcgggcagcaatggcttttactcc
tattttaaataa
DBGET
integrated database retrieval system
