Sciurus carolinensis (gray squirrel): 124979770
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Entry
124979770 CDS
T08117
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124979770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124979770
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124979770
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
HECT type E3
124979770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
124979770
NCBI-ProteinID:
XP_047400401
LinkDB
All DBs
Position
3:complement(174024470..174171555)
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AA seq
2068 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKRYSPPESRKSNSKAPKVQ
SNTTSELSRGHLSKRSCSSSSAVIVPQPEDPDRANTSERQKTGQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPKALEHTESPSETSKSHSKSKKRHLDQEQQLKSAQLPSTSKAHTRKS
VAAGSSRSQKRKRTESSCVKSGSGSESTGAEERSAKPTKLASKSAASAKAGCSTITDSSS
AASTSSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPESNQETVNSSAARTDEAPQ
GAAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIG
SGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQME
HNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRR
HSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLT
HQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMVV
RMFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLIC
ELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEVAAHQVGE
DEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGYSELKKDDARAQLM
KEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVS
SHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLTSPP
KTCTNGSGSLGSTTSVSSGTATAATNATADLGSPSLQHTRDDSLDLSPQGRLSDVLKRKR
LPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSAQSNSNNIEP
ARTAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSENMDGSNPALNVLQRLC
AATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSREI
RLKRFLHVFFSSPLPGEEPIGRVEPVGNAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNG
TGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVV
RGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVR
QFSIQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEESNKDCVGGKRGRAQTAPT
KTSPRNAKKHDELWHDGVCPSVSNPLEVYLIPTPPENITFEDPSLDVILLLRVLHAISRY
WYYLYDNAMCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPF
DTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAES
VMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQ
EGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYK
WMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNG
CSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDG
FESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILS
SFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLK
LPDYSSIEIMRDKLLIAAREGQQSFHLS
NT seq
6207 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccaaccacaagacgactcaataggaggaaggtcacatttagggcaggcaaaa
cataagagatatagccctcctgagagtagaaaatctaattctaaggcacccaaagtgcag
tctaatactacttctgaactatcaaggggacacctttctaaaagaagctgcagttcatca
tctgctgtcatagtcccacaaccagaggatccagacagagccaatacttcagaaaggcaa
aaaacggggcaggtgcctaagaaagacaattctcgaggagtgaaacgcagtgctagtcca
gattacaacaggaccaattctcctagctctgcgaaaaaacccaaagcacttgagcatact
gagtctccctcagaaacgagtaagtcacatagtaagtcaaagaagagacatttagaccag
gagcaacaactgaaatctgcacaattgccgtcaacaagcaaggctcacaccagaaagagt
gtggccgctggcagttcacggagtcaaaaaagaaaaaggacagagagttcttgtgtaaag
agtggttctgggtccgaatcaactggtgccgaagagagatctgcaaaacctaccaagctg
gcttcaaaatcagccgcctcagccaaagctgggtgtagcaccatcactgattcttcctct
gctgcctctacttcctcctcgtcctctgctgtagcctcggcctcttccacagtaccacca
ggtgccagggtgaaacaaggaaaagaccagaacaaggccaggcgttcccgttcagcatct
agtcccagtcccagaagaagtagcagagaaaaggaacagagtaaaactggtggctcttca
aaatttgattgggctgctcgtttcagccctaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggccaaa
ttagcaagtttaagaaaatctaccaagaagcgcagtgagtccccacctgctgagctcccc
agtttgaggcggagcacacgccaaaagaccacgggctcctgtgctagtaccagtcggcga
ggctctggcctgggcaaaagaggagcagctgaggctcggaggcaggagaaaatggcagat
cctgaaagcaaccaggagacagtaaattcttcagctgcccggacagatgaagctccccaa
ggagctgcagcctctagttctgttgcaggggctgttggcatgaccacctctggggaaagt
gaatcagatgattcggagatgggacgattacaagctctgttagaggccaggggtcttcct
cctcacctgtttggtcctcttggtcctcggatgtcacagcttttccatagaacaattgga
agcggagctagttctaaggcccagcagcttctgcaaggactacaagccagtgatgaaagt
cagcagcttcaggcagtgattgaaatgtgtcagctattggtcatgggaaatgaggagaca
ctggggggctttcctgtcaaaagtgtcgttccagctttgataacattactgcagatggag
cataattttgatattatgaaccatgcttgccgagccttaacgtacatgatggaagcactt
cctcggtcttctgctgttgtcgtggatgctattcccgtctttttagaaaagctgcaagtt
attcagtgtattgacgtggcagagcaggccctgactgccctggagatgttatcacggaga
cacagtaaagccattctacaggcaggtggtttggcagactgcttgctgtatctagaattc
ttcagcataaatgcccaaagaaatgcactagcaattgcagccaattgctgtcagagtatc
acaccagatgaatttcattttgtggcagattcactcccattgcttacccaaaggctaacc
catcaggacaaaaagtcagtagaaagcacttgcctttgttttgcacgactagtggacaac
ttccaacatgaggagaatttactccagcaggttgcctccaaagatctgcttaccaatgtt
caacaactgttggtagtgactccaccaattttaagttctgggatgtttataatggtagtt
cgcatgttttctctgatgtgttccaactgtccaacgttagctgttcaacttatgaagcaa
aatattgcagaaactcttcacttccttctgtgtggtgcctccaatggaagctgtcaggaa
cagattgatcttgttccacggagtcctcaagaactatatgaactgacatccctgatttgt
gaactcatgccatgtttaccaaaagaaggcatttttgcagttgataccatgttgaagaag
ggaaatgcacagaacacagatggtgcgatatggcagtggcgcgatgatcggggcctctgg
catccctataacaggattgacagccggatcattgaggtagcagcccatcaggtcggtgag
gatgagataagcttgtccactctgggacgagtttatactattgattttaattctatgcag
caaatcaatgaggacacgggaacagcacgtgccattcagagaaaacctaaccccttagcc
aatactaacactagtggatattcagagttaaagaaggatgatgctcgagcacagcttatg
aaagaggatccggaactggctaagtcttttattaagacattatttggtgttctttatgaa
gtgtatagttcctcagcaggacctgcggtcagacataagtgccttagagcaattcttaga
ataatttattttgcggatgccgaacttctgaaggatgttctgaaaaatcatgctgtttca
agtcacattgcttccatgctatcaagccaagatctgaagatagtagttggagcacttcag
atggcagaaattttaatgcagaagttacctgatatttttagtgtttacttcagaagagaa
ggtgtaatgcatcaagtaaaacatttagcagaatcagagtctttgttgacaagtccacca
aagacgtgtacaaatgggtcaggatctttggggtccacgacatcagtcagcagtggaaca
gccacagccgccactaatgctacagctgatttgggatctcccagtttgcagcacaccaga
gatgattctttagatctaagccctcaaggtcgattaagtgatgttctaaagagaaaacga
ctgccaaaacgagggccaagaaggccaaagtactcacctccaagagatgatgacaaagta
gacaatcaagctaaaagccccaccactactcagtcacctaaatcatctttcctggcaagc
ttgaatccaaaaacatggggaaggttaagtgcacagtccaacagtaacaacattgagccc
gctcgaactgcaggagttagtggtcttgccagagctgcctcaaaggacacaatatccaat
aatagagaaaaaattaaaggttggattaaggagcaggcacataaatttgtagagcgttac
tttagttccgagaatatggatggaagcaaccccgcactgaatgtccttcagagactttgt
gctgcaactgaacaactcaacctccaggtggatggtggagctgagtgccttgtagaaatc
cgtagcatagtctcagaatcagatgtttcatcatttgaaatccagcatagtggattcgtg
aagcagctattgctatatttgacatctaaaagcgaaaaggatgctgtgagcagagagatc
agattaaagagatttcttcatgtgtttttttcttctccacttcctggagaagaacccatt
ggaagagtagaaccagtgggtaatgcacctttgctggcattagttcacaagatgaacaac
tgcctcagccagatggaacagtttccagtcaaagtgcatgatttccctagtggaaatggg
acaggaggcagcttttctctcaacagaggatcacaggctttaaaatttttcaacacacat
cagttgaaatgccagttgcaaagacatcctgactgtgcaaatgtgaagcagtggaagggt
ggacctgtcaagattgaccctctggctttggtacaagctattgagagataccttgtagtt
agagggtatggaagagtaagagaagatgatgaagacagtgatgatgatggatcagatgag
gagatagacgagtctctggctgctcagttcttaaattcaggaaatgtaagacacaggcta
cagttttacatcggagaacatttgctaccatataacatgactgtatatcaggcagtgcgg
caattcagtatacaggctgaagatgaaagagaatccacggatgatgagagcaatcctcta
gggagagctggtatttggacaaagactcacacaatatggtacaaacctgtgagagaagat
gaagaaagtaataaagattgtgttggtggtaaaagaggaagagcccaaacagctccaacg
aaaacttcccctagaaatgcaaaaaagcatgatgagttgtggcatgacggagtgtgccca
tcagtatcaaatcctttagaagtttacctcattcccacaccacctgaaaatataaccttt
gaagacccatcattagatgtgatccttcttctaagagttttacatgccatcagtcgatac
tggtattatttgtatgataatgcaatgtgcaaggagattattccgactagtgaatttatt
aacagtaagttaacagcaaaagcaaataggcagcttcaagatcctttagtaatcatgaca
ggaaacatcccaacatggcttactgagctaggaaaaacctgcccatttttctttcctttt
gatacccgacaaatgcttttttatgtaactgcatttgatcgggaccgggcaatgcaaaga
ttacttgataccaacccagaaatcaaccagtccgattctcaagatagcagagttgcacct
agattggatagaaaaaaacgaactgtgaacagagaggagctgctgaaacaagccgagtct
gtgatgcaggaccttggcagttcaagggccatgttagaaatccagtatgaaaatgaggtt
ggtacaggtcttgggcctacactggagttttatgcacttgtatctcaggaactacagaga
gctgacttgggtctctggagaggtgaagaagtaactcttagcaatccaaaaggaagccaa
gaagggaccaagtatattcaaaacctccagggcctgtttgcgctgccctttggtaggaca
gctaagccagctcatatcgcaaaggttaagatgaagtttcgcttcttaggaaaattaatg
gctaaggctatcatggatttcagattggtggaccttccccttggcttacccttttataag
tggatgctacggcaagaaacttccttaacatcacatgatttgtttgacatcgatcctgtt
gtagccagatcagtgtatcacctagaagacattgtcaggcagaagaaaagactggaacag
gataaatcccagaccaaagagagtctacaatatgcattagaaacccttactatgaatggc
tgctcagttgaagatctaggattggatttcacgctaccagggtttcccaacatcgaactg
aagaaaggagggaaggatataccagtcactatccacaatttagaggagtatctgagactg
gttatattctgggcactaaatgaaggtgtttctaggcaattcgattcattcagagatgga
tttgaatcagttttcccactcagtcatcttcagtacttctacccagaggaactggatcag
ctcctgtgtggcagtaaagcagacacttgggatgcaaagaccttgatggagtgctgcagg
cctgaccatggttacacacatgacagtcgggctgtgaagttcttgtttgagattctcagt
agttttgataatgagcagcagaggttgtttctccagtttgtgactggtagcccacgattg
cccgttggaggattccgaagtctgaatccacctttgacaattgtccggaaaacattcgaa
tcaacagaaaacccagatgacttcttaccttctgtaatgacttgtgtgaactatcttaag
ttgccggactattcaagcattgagataatgcgtgacaaactgttgatagcagcaagagaa
gggcagcagtcattccatctttcctga
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integrated database retrieval system
