Sciurus carolinensis (gray squirrel): 124979776
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Entry
124979776 CDS
T08117
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04136
Autophagy - other
ncar04140
Autophagy - animal
ncar04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124979776
04136 Autophagy - other
124979776
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124979776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124979776
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124979776
Membrane trafficking [BR:
ncar04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
124979776
Others
Specific organelles associated proteins
Auto phagosome
124979776
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
124979776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
eIF2A
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
KASH_CCD
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
124979776
NCBI-ProteinID:
XP_047400430
LinkDB
All DBs
Position
3:176712087..176749348
Genome browser
AA seq
624 aa
AA seq
DB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQSFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HDVPNRHEISPGHDGSWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREMQMNEAKIAECLQTISDLETECLDLRSKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSEHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSSDAA
RRRSVSSFPVPQDNVDTHPGSSKDVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIK
QTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAV
AWSPSGVHVVSVDKSSKAVLWTQP
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgggcctccgcgctgccgacttcccccgttggaagcgccacattgcggaggag
ctgaggcgccgggaccggctgcagaggcagtcgttcgaggagatcatcctgcagtataac
aagttactggaaaagtcagaccttcattcagtgttggcccagaaactacaagctgaaaag
cacgatgtaccaaacaggcatgaaataagtcctggacatgatggctcatggaatgacagt
caactacaagaaatggctcaactgaggattaaacaccaggaagaactaacggaattgcac
aagaaacgtggggagttagctcagttggtgattgacctgaacaaccaaatgcagcagaag
gacagggagatgcagatgaatgaagcaaaaattgcagaatgtttgcaaactatctctgac
ctggagactgagtgcctagacctacgcagcaagcttcaggacctcgaggtagccaaccag
accctgaaggacgaatacgatgccctgcagatcacttttactgccttggaggagaaactg
aggaaaactactgaagagaaccaggagctggtcaccaggtggatggccgagaaagcccag
gaagccaaccgccttaatgcagagaacgaaaaggattccaggagacggcaagcccggctg
cagaaagagcttgccgaagcagcaaaggaaccactaccagttgaacaggatgatgatatt
gaagtcattgtggatgagacctcagagcacacagaggagacctctcctgtgcgagctatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttgggacatcattcttcttctgatgctgcc
aggagacgctctgtctcttccttcccagtcccccaggataatgtggatactcatcctggt
tctagtaaagatgtgagggtaccaactactgccttatgtgtctttgacgcacacgatggg
gaagttaatgctgtgcagttcagtccaggttctcggttactggccacaggaggcatggac
cgcagggttaagttatgggaagcatttggagataaatgtgagttcaaaggctccctatct
ggtagtaatgctggaattacaagtattgaatttgatagtgctggggcttacctgttagca
gcttcaaatgattttgcaagccgaatctggactgtggatgattatcgattacggcacaca
ctcacaggacacagtgggaaagtactgtctgccaagttcctgctggacaacgcacgaatc
gtctcaggaagtcacgaccggaccctcaaactctgggatctacgcagcaaagtctgcata
aagacagtgtttgcaggatccagttgcaatgatattgtctgcacagagcagtgcgtaatg
agtggacattttgacaagaaaattcgtttctgggacattcgatcagagagtgtggttcga
gaaatggagctgttggggaagattactgccttggatctaaacccagaaaggactgaactc
ctgagctgttcccgtgatgacctgctgaaagtcattgatctgcgaacgaatgccatcaag
cagacattcagtgcgcctggattcaagtgtggctctgactggaccagagtcgtcttcagc
cctgatggcagttatgtggcagcaggctcagctgagggttctctctatgtctggagtgtg
ctcacagggaaagtggagaaggttctttcaaaacagcacagctcctccatcaacgctgtg
gcgtggtctccctctggagtgcatgtcgtcagtgtggacaaaagcagcaaagctgtgctg
tggacacagccttga
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