Sciurus carolinensis (gray squirrel): 124979828
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Entry
124979828 CDS
T08117
Name
(RefSeq) ABC-type organic anion transporter ABCA8-like isoform X1
KO
K05650
ATP-binding cassette, subfamily A (ABC1), member 8
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124979828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124979828
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
124979828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_15
SMC_N
AAA_23
MMR_HSR1
Dynamin_N
URGCP_GTPase
Motif
Other DBs
NCBI-GeneID:
124979828
NCBI-ProteinID:
XP_047400547
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All DBs
Position
3:10976708..11047056
Genome browser
AA seq
1621 aa
AA seq
DB search
MSKREISVCQQTWALLHKNILKKWRMKRESLMEWTNALFLLLCLYLYPHGHQMKDFSSLP
PEDLGRVDSFSGSKFTIAYSPITNVTQQIMGRVVTTSFMTGEEVMGLADEESIKELAADY
YGEIVKIIFTNTYSYHLKFLGSRIPVGKEHKDHEAHCFETLDDVECYISIFWKEGFVALQ
AAINAAIIETTTNRSAMEELLSVTGKYMKIQPFVSQGGVMTDFFIFFCIVSFSPFIYYAS
INVTRERKKMKGLMAMMGLRDSAFWLSWGLLYAGFIFVMALFLALIIKSIQFFILTNFMV
IFILFLLYGLSLIALAFLMSVLVKKSFLSSLVVFLLTVFWGNLGFTALYRYLPVSLEWIF
SFLSPFAFTLGMSQLLHLDYDLNSNAFLHASDGSNLIIATNFMLAFDTFLYLALMMYFEK
ILPNEFGHKRSPLFFLKSSFWSRQPQADRVILEDEIDSSPSSNDSFEPMSPEFRGKEAIR
IRNVTKEYKGKPDKIEALKDLVFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVT
IYNNKLSEINDLENIIKITGVCPQSNVQFDFLTVRENLRLFAKIRGIPPQEVEQEIQRVL
LELEMKNIQNVLAQNLSGGQKRKLTFGIAILGDPQMFLLDEPTAGMDPFSRHRIWNLLKE
RKTDRVILFSTQFMDEADILADRKVFLSKGKLKCAGSSLFLKKKWGIGYQLSLQLNEICA
REKITSLVKQHIPDAKLSAESEGKLVYTLPLETTYRFPELYMDLDSSPSLGIENYGVSMT
TLNEVFLKLEGKSAIDESDVDILGEAQVERAGDTERLVEMEQILSSLPEKSEKAGGVALW
ARQIGAIAKVRFLKLKHERKALLSLLLILVVGFAPVLLDYILMKVYQNGYTWELCPHLYF
LAPGQQPHDPLTRLLIINKTGASIDDFVHAVEHQNIAVEVDAAGARNGIDDPSYNGAIVV
SGNEEKYNFSLACNTKRLNCFPVLMDIVSNGLLGMVTPSAHIQTDSSTFLGNLWNIPFEF
LGYTIFWLILLSSCSPYIAMSSIDDYKSRMRSQLRISGLFPSAYWLGQALVDIPLYCLIF
LFMYLMDYTLNFQETIFTFISHIIQIPCAVGYSMSLIFFTYVISFIFRKGRKNSGIWSFC
FFVVTLSSVLMFLLEIPESSVLFCIVFLIPQATLIGCLFLSYHLFTYDIFDDEPNSRETF
LVFLIPLLHFIIFLFILRCLEWKFGKKPMGKDPFFRISPRSIDVRQNLEEPEGEDEDVQM
ERVRTANALNSTDVDEKPVIIASCLRKEYAGKRKHCFSKRKSKIATRNVSFCVRKGEVLG
LLGHNGAGKSTSIRVITGDTKSTAGQVLLQGSSGGDAPGFLGYCPQENVLWPNLTVREHL
EVFATVKGLRKGDAAVAITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGSPSVVL
LDEPSTGMDPEGQQQMWQAIKATIRNTKRGAILTTHYMAEAEAVCDRVAIMVSGRLRCIG
SIQHLKSKFGKDYLLEMKVKTPAQVEPLHAEILRIFPQAARQERYSSLMVYKLPVEDVQP
LAQAFFKLEKLKQSFRLEEYSLSQSTLEQVFLELSKEQELDDFDNELDPSVQWKLLPQEE
P
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagagagagataagcgtgtgtcaacaaacttgggccttattacataagaacatt
cttaaaaaatggagaatgaagagagagtccttaatggaatggacgaatgcattgttcctc
ctactttgcttgtacctgtatcctcatggtcatcaaatgaaggacttttcttcactgcct
ccggaggacctgggacgggtagattcatttagtggatccaaatttacaatcgcatactca
cctatcaccaatgtaacccaacagataatgggtagagtagttactacctccttcatgaca
ggtgaagaagtcatgggactagcagatgaagaaagcattaaagaattagcagcagattat
tatggtgaaatagtaaaaatcatctttacaaacacatactcgtatcatctgaaattcttg
ggatccagaatcccggtagggaaggaacacaaggaccatgaagctcattgttttgaaacg
ttggacgatgttgaatgttacatctcaatattctggaaggaaggtttcgtggctcttcaa
gctgccattaatgctgctattatagaaaccactacgaatcgttcggcgatggaggagctg
ctgtcagttactggaaaatacatgaagatacagcccttcgtcagtcaaggaggagttatg
actgattttttcattttcttctgcatcgtctccttctccccgttcatttactacgcgtct
atcaatgtcacaagggagaggaagaagatgaagggactgatggccatgatgggcctgcgg
gattcggcattctggctctcctggggtttgctctatgctggcttcatcttcgttatggcc
cttttcttggcacttattataaaatctatccagtttttcattctgaccaacttcatggtg
atttttatcctttttctcctttacggattgtcactgattgctctggctttcttgatgagc
gtcttggtgaagaagtctttcctcagcagcttggtagtgttccttcttactgtcttctgg
gggaacctgggattcacagctttgtacagatacctccctgtgtccttggagtggattttc
agttttcttagcccatttgccttcacccttggaatgtcccagctcttacacttggactat
gacttaaattcgaatgcatttctccatgcatcggacggctcaaatctaattatagcaaca
aatttcatgttggcatttgacactttcctctatctggcattgatgatgtactttgaaaaa
attctgccaaatgaattcggacataaacgttcacccttgtttttcctgaagtcctcattt
tggtcacgacaaccacaggctgatcgtgtgatcctcgaagatgaaatagattctagtcct
tcatcaaatgactcttttgaaccaatgtctccagaattccgagggaaagaagccatcaga
atcagaaatgttacaaaagaatataaaggaaaacctgataaaatagaagctttgaaagat
ctggtatttgacatttatgaaggccaaatcactgcaatacttggtcacagtggagctgga
aaatcaacgctgttaaatattcttagtgggctgtcagttcccaccaaaggttctgtcacc
atctacaataataaactctcagaaatcaatgacctagaaaacatcatcaagatcactgga
gtttgtccacaatccaatgtacaatttgacttccttaccgtgagagaaaacctcaggcta
tttgctaaaataagagggattccaccacaagaagtggagcaagagatacaaagagttttg
ctggaattggaaatgaaaaatattcagaatgttctcgctcaaaacttaagtggtggacag
aaaagaaaactaaccttcgggattgccattttaggagatcctcagatgttcctgttggat
gaacccactgctggaatggatcccttttcaagacaccgaatttggaacctcctaaaagag
cgtaaaacagatcgtgtgatcctgtttagtacgcagttcatggatgaggctgacatcctg
gcagataggaaagtgtttctctccaaggggaaactgaagtgtgcaggttcttcattgttt
ctgaagaagaagtgggggatcggataccaactaagtttgcagttgaatgaaatatgtgct
cgggaaaagataacatcccttgttaaacagcacatccctgatgccaaattatcagcagag
agtgaaggaaagcttgtctatacattacccttagaaacaacctatagatttccagaactt
tacatggatcttgatagcagtcccagcctggggattgagaattatggtgtttccatgaca
actttgaatgaagtgttcctgaagttagaaggaaaatcagcaattgatgaatcagatgtc
gacattctaggagaagcgcaggtggaaagagccggggacactgaaagacttgttgagatg
gaacaaatcctctcttcacttccggagaagagtgagaaagcagggggcgtggctctctgg
gcgcgacaaatcggtgcaatcgcaaaggttcgtttcctgaagctgaagcacgaaagaaaa
gctcttctatcactgctgttgattctggtggttggatttgcccctgttcttttggactac
atcttgatgaaagtctatcagaacggttacacttgggaactgtgtcctcatttgtacttc
cttgctcctggacaacagccacacgaccctctcactcgattattgatcattaataagaca
ggggcaagcattgatgactttgtacatgctgtggagcaccagaacatagctgtggaggtg
gatgcagctggagctagaaatggcatagatgacccgtcttataatggagccattgtagtg
tctggtaatgaagagaaatacaacttttcattagcatgcaataccaaaagactgaattgc
ttcccggttctcatggatattgttagtaacgggctacttggaatggttactccgtcagca
catattcagactgacagcagcacatttttggggaacctatggaatattccatttgagttc
ctgggatacaccatattctggctgattttgctgtccagttgttctccttacattgccatg
agcagcattgacgactacaagagcagaatgaggtcccagctgcggatttcgggcctcttt
ccttccgcgtactggcttgggcaggcactggtggacattcccctctactgcttgatcttc
ctttttatgtatttaatggactacactttaaacttccaagagactatattcacatttata
agtcatattattcaaatcccgtgtgctgttggttactccatgtcccttatcttctttaca
tatgtgatttcattcatctttcgaaaggggagaaaaaatagtggtatttggtcattttgc
ttctttgtcgtcaccttgtcctctgtgcttatgtttctgttggagatacctgaaagtagt
gtgctattttgcatcgtctttttaataccacaagccacattgattggctgcctgttctta
tcttatcatcttttcacgtatgatatctttgatgacgaaccaaatagtagagaaactttt
ctggtcttcctaattcccttgcttcattttatcatttttctttttattctccgatgtctg
gaatggaagtttgggaagaaacccatgggaaaggatcccttcttcagaatttctccaaga
agcattgatgtgcgtcaaaatctagaagagcccgaaggggaagatgaagacgttcagatg
gaaagagtgagaacggctaatgccttgaattccacagacgtcgatgagaagccagtcatt
atcgccagctgtctacgcaaggagtatgcagggaagaggaagcattgcttctccaagagg
aagagtaaaatagccaccaggaatgtctcattctgtgtgaggaaaggtgaagttttagga
ttgttaggacataatggagctggtaaaagtacatccattagggtgataactggagacaca
aaatcaactgctggccaggtgctcctccaaggcagcagcggaggggacgccccgggcttc
ctggggtactgtcctcaggagaatgtgctgtggcccaacctgaccgtgagggaacacctg
gaggtatttgccaccgtgaagggactgaggaaaggggatgccgccgtcgccattacacgg
ttggtggatgcgctcaagctgcaggaccagctgaaggctcccgtgaagaccttgtcagag
ggaataaagcgaaagctgtgcttcgtgctgagcatcctagggagcccgtcggtggtgctt
ctggatgagccgtccaccggaatggaccccgaggggcagcagcagatgtggcaggccatc
aaggctaccattaggaacaccaagaggggcgccatcttgaccacccattacatggcagag
gcagaagccgtgtgtgaccgcgtggccatcatggtgtccggacggctgaggtgtatcggt
tccatccaacacctaaaaagcaaatttggcaaagattacctgctggagatgaaggtgaag
acccctgcacaggtggaacccctccacgcggagattctcaggattttcccccaggccgct
cgacaggaaaggtactcttctctgatggtttataagttaccagtggaggacgtgcagccg
ctagcccaggctttctttaaattggagaagctcaagcagagcttccgcctggaggagtac
agcctctcgcagtccaccctggagcaggttttcctagagctctccaaagagcaggagctg
gatgactttgataatgaacttgatccttctgtgcagtggaagcttctcccacaggaagag
ccttag
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integrated database retrieval system
