Sciurus carolinensis (gray squirrel): 124979829
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Entry
124979829 CDS
T08117
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124979829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124979829
Spliceosome [BR:
ncar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124979829
Complex C
U5 SnRNP specific factors
124979829
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
124979829
NCBI-ProteinID:
XP_047400551
LinkDB
All DBs
Position
3:61710440..61743574
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggcaacccggtgcccggccctctagccccg
ctgccagactacatgtcagaggagaagctgcaggagaaagcccgaaagtggcagcagttg
caggccaagcgttatgcagaaaaacggaagtttgggttcgtggatgctcaaaaggaagat
atgcccccagaacatgtcaggaagatcattcgagaccatggagacatgaccaacagaaag
ttccgccatgacaaaagagtctatttgggtgccctaaagtacatgccccatgcagtcctc
aagctcctggagaacatgcctatgccttgggaacagattcgggatgtgcctgtgctgtac
catatcactggagccatttccttcgtcaatgaaattccttgggtcattgagccagtctat
atctcccagtgggggtcaatgtggatcatgatgcgtcgagaaaaaagagataggaggcat
tttaagaggatgcgcttccctccttttgatgatgaggagccacctttggactatgctgac
aacattttagatgttgaacccctagaagccattcagctagaactagacccagaggaggat
gcacctgtgctggactggttttatgatcaccagcccttaagagacagtagaaagtatgtt
aatggctccacttaccagcgctggcagttcacactacctatgatgtccactctttaccgc
ctggccaatcagctcctaacagatttggtggatgacaattacttctatctttttgatctg
aaggccttctttacctctaaggcacttaatatggctatccctggaggtcccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgaattcaatgatattaat
aagatcattatccgacagcctattcgcactgaatacaagattgcttttccttacctgtac
aacaaccttccacatcatgtccacctcacctggtatcatactcctaatgttgtattcatc
aaaactgaggatcctgatttgccagctttctactttgatcctttgatcaacccaatctct
cataggcattctgtcaagagccaggaaccattgccagatgacgatgaagaatttgagctc
ccagagtttgtggagcccttcctgaaggacacacccctctatacagataacacagccaat
ggcattgccctcctttgggccccacggccctttaatctccgctctggccgcacccgccgg
gccctggacataccccttgtcaagaactggtatcgggagcattgtcctgctgggcagcct
gtcaaagtgagagtctcttaccagaaactgcttaagtactatgtgctgaatgccctgaag
catcggccccctaaggcccaaaagaagaggtatctattccgctccttcaaagctaccaaa
ttcttccagtccacaaagctagactgggtagaagtggggcttcaggtttgccgccagggc
tacaacatgctcaaccttctcattcatcgtaaaaacctcaactacctgcacctggactat
aacttcaacctcaaacctgtcaagacacttaccactaaggaaagaaagaaatctcgtttt
gggaatgctttccatttgtgtcgggaagtactgcgtttaactaagctggttgtggacagt
catgtgcagtatcggttgggcaatgtggatgccttccagctggcagatggattgcagtat
atatttgcccatgtggggcaactgacaggcatgtatcgatacaaatacaagctgatgcga
cagatccgcatgtgcaaggacctgaaacatctcatctattaccgtttcaacacgggccct
gtagggaagggccctggctgtggcttctgggctgctggctggcgggtctggctgtttttt
atgcgtggcattactcctttgctggaacgatggctgggcaatctcctggcccggcagttt
gaaggccgacactcaaagggggtggcgaagacagtaacgaagcagcgagtggagtcacat
tttgaccttgaacttcgggcagctgtgatgcatgacattctggacatgatgcctgagggg
atcaaacagaataaggcccggacaatcctgcagcacctcagtgaagcctggcgttgctgg
aaggccaacattccctggaaagttccaggactgccgacacccatagaaaatatgatcctt
cgatatgtgaaagccaaggctgactggtggaccaacactgcccactacaaccgggaacgg
atccgccgtggggccactgtagacaagactgtttgcaaaaagaacttgggccgccttacc
cggttgtacctgaaggcagaacaggagcggcagcacaattacctgaaggatgggccttat
atcacagcagaggaagcagtggcagtgtataccaccactgtgcattggttggaaagccgt
agattctcgcccatcccattccccccgctctcttacaagcatgacaccaagttgctcatt
ttggccttggagcgactcaaggaagcttatagtgtgaagtctcgattaaaccagtctcag
agggaagagttaggtctgattgagcaagcctatgacaacccccatgaggcattgtctcgc
atcaaacgtcacctcctcacacagagagcctttaaggaagtgggcattgaattcatggat
ctttatagtcacctggtgccagtgtatgatgtggaaccactggagaagataactgatgcc
tacttggaccagtacctgtggtatgaagcagacaagcgtcgccttttcccaccctggatc
aaacctgctgacacagaaccacctccgctacttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggaaaccagtgagggtgagtgcaacgtcatgctggaatcacgt
tttgaaaagatgtatgaaaagattgatttgaccctgcttaataggctgctgagactcatt
gtggaccacaacattgctgactacatgacagccaagaacaatgtcgtcatcaactataag
gacatgaaccatacaaattcatatgggatcatcagaggtctgcagttcgcctccttcatt
gtgcagtactatggcttggtgatggatttgctggtactgggattgcacagggccagtgag
atggctggaccccctcagatgccaaatgactttctcagcttccaggatatagccactgag
gctgctcatcccatccgactcttctgtagatacattgatcgaattcatattttcttcagg
ttcacagcagatgaggctcgggacctgatccagcgttacctaacagagcaccctgacccc
aacaatgaaaacatcgttggttataataacaagaagtgctggccccgagatgcccgcatg
cgcctcatgaagcatgatgtcaacttgggtcgagcagttttttgggacatcaagaaccgt
ctgccacgatcggtgactacagttcagtgggagaacagctttgtgtctgtgtacagtaaa
gacaaccctaacctgctattcaacatgtgtggctttgagtgccgcatcctgcctaaatgc
cgcaccagctacgaggagttcacccacaaggatggagtctggaacctgcagaatgaggtt
actaaggaacggacagctcagtgtttcctgcgtgtggatgatgagtcaatgcagcgattc
cacaaccgtgtacgtcaaattctgatggcttctggctctaccaccttcaccaagattgtg
aataagtggaatacagctcttattggcctaatgacatactttcgggaggctgtggtgaac
acccaggaactcctagacttgctggtaaaatgtgagaacaagatccagacacgtattaag
attggactcaactccaagatgccaagtcggttccctcctgttgtgttctacacccctaag
gagttgggaggactcggcatgctctcaatgggccatgtgctcatcccccagtctgatctc
aggtggtccaagcagacagatgtaggtatcacacactttcgttcagggatgagccatgaa
gaagaccaactgattcccaacttataccgctacatacagccatgggagagtgagttcatt
gattctcagcgtgtgtgggctgaatatgcactcaagagacaagaggccattgctcagaac
agacggctgacattagaagatctagaagactcttgggatcgtggcattcctcgaatcaat
actctcttccagaaggatcggcacacattagcttatgataagggctggcgtgtccgaact
gactttaagcagtaccaggttttgaagcaaaaccctttctggtggacacaccagcgacat
gatgggaagctctggaacctaaacaactaccgtacagacatgattcaggccctgggtggt
gtggaaggcattctggaacacacactcttcaagggcacttacttccctacctgggaaggt
cttttctgggagaaggctagtggctttgaggaatctatgaagtggaagaagctaactaat
gctcagcgatcgggattgaaccagattcccaatcgtagattcaccctctggtggtcccca
accatcaatcgggccaatgtatatgtgggctttcaggtgcagctggacctgacaggtatc
ttcatgcatggcaagatccccacactgaagatctctctcatccagattttcagagctcac
ttgtggcagaagatccatgagagcattgtcatggatttgtgtcaggtatttgaccaggaa
ctggatgcactggaaatagagacagtgcaaaaggagacaatccatccccgaaagtcctat
aagatgaactcttcctgtgcagatatattgctctttgcttcctataagtggaatgtctcc
cgaccctcattgctggcagactccaaggatgtgatggacagcacaaccactcagaagtat
tggatagacatccagttgcgctggggcgactatgattcccatgacattgagcgctatgcc
cgggccaagttcctggactacaccacagacaacatgagtatttacccttcgcccacaggt
gtgctcattgcaattgacttggcatataatctgcacagtgcttatggaaactggttccca
ggtagtaagcctctcatacagcaagccatggccaagatcatgaaagcgaaccctgccttg
tatgtgttacgtgaacggatccgcaaggggctacaactctattcatctgagcccactgag
ccatatttgtcctctcaaaattatggcgaactcttctctaaccagattatctggtttgtg
gatgacactaatgtctacagagtgactatccacaagacctttgaagggaacttgacaacc
aagcccatcaatggggctatcttcatcttcaacccacgcacagggcagctgtttctcaag
ataatccacacatctgtgtgggctggacagaagcgtttggggcagttggccaagtggaag
acagctgaagaagtagctgccctgatccgatctctgcctgtggaggagcagcccaagcaa
atcattgtcaccaggaagggcatgctggatcctttggaggtacacttgctggacttcccc
aatattgtgatcaaaggatcggagcttcaacttcccttccaagcttgtctcaaggtggaa
aagtttggagatctcattctcaaagccacggaaccccagatggttctcttcaacctctat
gatgactggcttaagacaatctcatcttacacggctttctcccgtctcatcctgattctg
cgtgctctgcatgtgaacaatgacagggcgaaggtaatcctgaagccagataagactact
attacagaaccccaccacatctggcccaccctgactgacgaagagtggatcaaagtggag
gtgcagctcaaggatctgatcttggctgactatggcaagaaaaacaatgtgaacgtggca
tcactgacacaatcagaaattcgagacatcatcttgggtatggagatttcagcaccatca
cagcagcggcagcagatagctgagattgagaagcagaccaaggaacagtcacagctgact
gctacacagactcgcactgtcaacaagcatggtgatgagatcatcacctccacaaccagc
aactatgaaactcaaactttctcctcaaaaactgaatggagggtcagggccatctctgct
gccaatctgcacctacggaccaatcacatttatgtttcatctgatgacatcaaggagact
ggttacacttacatccttcccaagaatgtgcttaagaagtttatctgtatatctgacctt
cgtgcccaaattgcagggtacctgtatggggtgagcccaccggataacccccaagtaaag
gaaatccgctgcatcgtgatggttccacagtggggcactcaccagactgtgcacctgcct
ggtcagctgccccagcatgagtacctcaaagagatggagccgttaggttggatccacact
cagcccaatgagtccccccagctatcaccccaggatgtcaccacccatgccaagatcatg
gctgacaacccatcttgggatggggagaagaccattattatcacctgcagcttcacacca
ggctcctgcacattgacagcctacaagctgacacccagtggctatgaatggggccgccag
aacacagacaaaggcaacaaccccaagggttatctaccctcacactatgagagggtccag
atgctgctgtcagaccgcttccttggcttctttatggttcctgctcagtcctcatggaac
tacaactttatgggtgtccgacatgatcccaacatgaagtatgagttgcagctggcaaac
cctaaagagttctaccatgaggtgcacagaccctcccacttcctcaactttgccctgctg
caagagggagaggtctattctgcagatcgagaggacctctatgcctag
DBGET
integrated database retrieval system
