KEGG   Sciurus carolinensis (gray squirrel): 124980019
Entry
124980019         CDS       T08117                                 
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    124980019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncar03019]
    124980019
Messenger RNA biogenesis [BR:ncar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     124980019
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Collagen WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 124980019
NCBI-ProteinID: XP_047401055
LinkDB
Position
3:71389045..71489979
AA seq 1336 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLN
PRGMQGPPGPRENQGPAPQGMMMGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPP
PQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPI
PFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR
GPPNHHLGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFH
PDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGR
RPGEERFPREPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASD
EAARARDLRGRGRGAPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPR
PDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGK
GRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMN
SGPPRRGASRGGGRGR
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggccacagaaattggttctcctcctcgttttttccatatgccacggttccaacaccag
gcacctcgacaactattttataaacgacctgacttcgcacagcagcaagcaatgcagcag
cttacctttgatggaaaacgaatgagaaaagctgtaaaccgaaaaaccatagactataat
ccatctgtaattaagtatttagagaatagaatatggcaaagagaccagagagatatgagg
gcaattcagcctgatgcaggttattataatgatctggttccacctataggaatgttgaat
aatcctatgaatgcagtaacaacaaagtttgttcggacatcaacaaataaagtaaagtgt
ccagtatttgttgtcaggtggactccagaaggaagacggttggttaccggagcttctagt
ggagagttcaccttgtggaatggactcactttcaattttgaaacaattttacaggctcac
gatagcccagtgagggccatgacttggtcacataatgacatgtggatgttgacagcagac
cacggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcatggtgctgatgtgaaatgtgtagactggcatccaaccaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcatgcccataaaaacactgtaatggaagtgaaattaaacctcaatggc
aattggctactcacagcatcacgtgaccatctctgtaaactttttgacattcgaaacctg
aaagaagagcttcaagtcttccgaggtcataagaaagaagccacagctgtggcctggcat
cctgttcatgagggactttttgccagtggaggatcagatggttctttgttattctggcat
gttggagtagaaaaggaggtgggtgggatggagatggctcatgaaggaatgatctggagt
ctggcctggcatcctcttggacatattctctgctcaggctcaaatgaccacactagcaaa
ttctggactcgaaaccgaccaggtgataaaatgcgagatcgatataatctaaacctgtta
cctggaatgtctgaagatggagtagaatatgatgaccttgaacctaatagcctggcagtg
attccagggatgggaataccagaacaactaaaattagctatggaacaagagcagatgggg
aaggatgaatcaaatgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtgatgcaaaaggatcagaaaaaagtacctcagaagaaagtcccttatgcaaaacctatt
cctgctcagttccagcaggcctggatgcaaaataaagtacccatccctgctccaaatgag
gtgctgaatgacagaaaagaagacattaaattggaagagaagaaaaaaacacaagcagaa
attgagcaagaaatggccacattacaatataccaatccacagcttttggagcaacttaaa
attgaaagacttgcgcagaaacaggctgagcaaattcagccccctccctcatctggcacc
cctctccttggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcagcagccccatccatctcagcagatgccaatgaacatggctcagatggggcctcca
ggtccacagggacagtttagacccccgggacctcagggacaaatgggaccacaaggtcct
ccactgcatcagggaggtgggggtccacaaggattcatgggaccacaggggccccagggc
ccaccccaggggctcccaaggcctcaggacatgcatggaccccaaggaatgcagaggcac
cctggacctcatggccctttgggacctcaggggccacctggaccacagggtagttctggt
cctcaaggtcatatgggtcctcagggtccacctggcccacagggtcacataggccctcaa
ggcccacctggtccccagggccacttgggcccacaggggcctcctggtactcaaggtatg
cagggaccacctggtcccagaggaatgcaaggacctccacatcctcatggaatacaaggt
ggaccagggtctcaaggaatccaaggtcctgtgtctcagggacctctaatgggattgaat
ccaagaggaatgcaggggcctccaggtccccgagagaatcagggtcctgctccccaaggg
atgatgatgggccacccacctcaagagatgagaggacctcaccctccaagtggactgctg
ggacatggccctcaggaaatgagaggtcctcaggagatgagaggcatgcaggggcctcca
ccccaaggatcaatgctgggccctccccaggaactgcgaggtcctccaggctcacaaggt
cagcaggggccgccccagggctctttgggacctccaccccagggtggcatgcaagggccc
cctggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaata
ccattccagcagcagaaaacaccactgctaggtgatgggccccgggcccccttcaatcag
gaaggacaaagtacaggccccccacccctcataccaggcttaggacaacagggagcacaa
ggccgcatcccccctctgaatcctggacaaggacctggccctaacaaaggtgactcccgt
ggccctccaaaccatcacctgggcccgatgtcagagaggcggcatgagcagagtggtggc
cctgagcatgggcctgagagagggccttttcggggtggccaggactgcaggggtccccct
gacaggcgtggccctcaccctgacttccctgatgacttcagcagacctgacgacttccac
cccgacaagcgctttggccaccgcttacgtgaatttgaggggcgaggaggacctttgcca
caggaagagaagtggaggcgagggggccctgggcctccgtttcctcctgatcacagggaa
ttcagcgagggagatggccggggtgcagcccgaggtcctccaggggcatgggaaggccgc
agacctggagaggagcgcttccctcgggaacccgaggacccacgttttcgagggcgcaga
gaagaaagcttcagaagaggagcaccaccgagacatgagggccgtgccccacccagagga
agggatggttttcctggtcctgaagactttggtccagaggagaattttgatgcttctgat
gaggcggccagagcacgagatctccgaggccgaggtcggggtgccccacgaggaggaagg
aaaggcttacttcccacccctgatgagttccctcgatttgaaggaggacggaagccagac
tcctgggacggaaaccgagagccaggaccaggtcatgaacatttccgtgatgctccccgc
cctgatcatccccctcatgacggtcattccccagccagcagagaacgctcttcttctcta
caaggcatggacatggcatccctgccaccccgaaagcgcccctggcatgatgggccaggc
acttctgagcacagagagatggaagccccagggggcccttctgaggaccgaggaggcaaa
ggccgaggtggcccgggaccttctcagagagtgccaaaatctgggcgttccagctctttg
gatggagaccatcacgatggataccatagagacgaaccttttgggggtcctccgggcagt
ggcaccccctctcgagggggccggagtgggagtaactggggtagagggagcaacatgaac
tctggccctccaaggcgaggtgcttcaaggggtggtggaaggggtcggtag

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