Sciurus carolinensis (gray squirrel): 124980084
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Entry
124980084 CDS
T08117
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 3
KO
K22991
WD repeat-containing protein 45
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124980084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124980084
Membrane trafficking [BR:
ncar04131
]
Autophagy
Other autophagy associated proteins
Others
124980084
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_WDR5
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_IFT122_1st
BCAS3_WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_VPS8
WD40
ANAPC4_WD40
WD40_Prp19
Beta-prop_Vps41
Beta-prop_WDR3_2nd
Beta-prop_IFT122_2nd
WDR55
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_EML
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
CFAP251_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_2nd
DUF5711
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_2nd
DUF1513
Beta-prop_DCAF12
Beta-prop_EMC1_N
Motif
Other DBs
NCBI-GeneID:
124980084
NCBI-ProteinID:
XP_047401225
LinkDB
All DBs
Position
3:489939..507296
Genome browser
AA seq
447 aa
AA seq
DB search
MRSALPAAWPWLDALGVPRPPAAVGCTPRSPPSLPIVGRPRRSAVCLSAHARAHARTHAR
TVARSPLRPSLPVAAASAPPVKTDRRVPEGHAALRRGGPCGGAMNLLPCNPHGNGLLYAG
FNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKY
PPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFET
CYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCVALNLQG
TRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIF
AAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSY
YKFLFNPKGECIRDVYAQFLEMTDDKL
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggcgctccccgccgcctggccgtggttggatgcgctcggcgttccccgcccg
cctgccgcggttggatgtactccgcgctccccgcctagtcttccaatagttggacgccct
cggcgctcggcggtctgcttgtctgcgcacgcgcgcgcgcatgcacgcacgcacgcacgc
acggtggcacgctcgcctctacgcccctcgcttccggtcgcggcggcctccgcgccgccg
gtcaagaccgaccgccgggtaccggaggggcatgcggcgctgaggaggggcggaccctgc
ggcggcgccatgaacctcctgccgtgtaacccgcatggcaacgggctgctgtacgccggc
ttcaaccaggaccacggatgctttgcgtgtgggatggagaatggatttcgagtctacaac
actgatccactcaaagagaaggagaaacaagaatttttagaaggaggagttggccatgtg
gaaatgttatttcgctgcaactatttagctttagttggtggtggaaaaaagccaaaatac
cctcccaacaaagtgatgatctgggatgacctgaagaagaagaccgtcatcgagatagag
ttctccaccgaggtcaaggctgtcaagttgcggcgagatcggatcgtggtggtcctggac
tccatgatcaaggtgttcaccttcacgcacaatccccaccagctgcacgtctttgagacc
tgctataaccctaaaggcctctgtgtcctgtgtcccaacagtaataattcccttttggcc
ttcccgggtacccacaccggccatgtgcagctcgtggacctggccagcactgagaagccg
cccgtggacatccccgcccatgagggtgtcctgagctgtgttgctctcaatctgcagggc
acaagaatcgcaactgcatctgaaaaagggacccttataagaatatttgatacttcatca
gggcacctgatccaggagctgcggagaggatcccaagcggctaacatctactgcatcaac
ttcaatcaggatgcttctctcatctgtgtgtccagtgaccacggcacagtgcacattttt
gcagctgaagatccaaagcggaataaacagtccagtttggcatcagccagtttcctcccc
aaatacttcagttccaaatggagtttctccaagtttcaggtcccctcaggctctccatgc
atttgtgcctttggaacagagccgaatgcggtcattgcaatctgtgccgatggcagctac
tacaagttcctgttcaaccccaagggcgagtgcatccgggatgtgtacgcgcagttcctg
gaaatgactgatgacaagctgtga
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