Sciurus carolinensis (gray squirrel): 124980320
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Entry
124980320 CDS
T08117
Name
(RefSeq) nuclear pore complex protein Nup85 isoform X1
KO
K14304
nuclear pore complex protein Nup85
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124980320
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124980320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124980320
03036 Chromosome and associated proteins [BR:
ncar03036
]
124980320
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124980320
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124980320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
TPR_4
TPR_16
Motif
Other DBs
NCBI-GeneID:
124980320
NCBI-ProteinID:
XP_047401709
LinkDB
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Position
3:complement(5851423..5883070)
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AA seq
656 aa
AA seq
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MEELDGEPTVTLIPGVNSKKKQMCFDWGPGEMLVCETSFNKKEKSETAPNCPFIYIIWKD
VDVYSHILRKLFNESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQFA
IAAKDPASGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL
SADVLGSENPSKHESFWNLVTVLVLQGRLDEARQMLSKEADASPSSAGMCRILGDLMRTM
PILSPGNSQTLAELELKWQRWREECERHLQDGTFASSPRLESLCKIMLGDEAALLEQKEL
LSNWYHFLVTRLLYSHPTVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQV
IKECSIALSNWWFVAHLTDLLDHCRLLQAHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
VDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRN
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGK
YREFHRLYGEKRFGDAASLLLSLMTSQIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYEL
MRCLEDLTSGKPERADPDAQRLQDDDIETTKVEMLRLALARNLARAIIREGSLEGS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctggacggcgagccgacagtcactttaattccaggtgtgaattccaagaag
aagcaaatgtgttttgactggggacctggggagatgctggtgtgtgaaacttccttcaac
aaaaaagaaaaatcagagacagccccaaactgtccctttatctatatcatctggaaagat
gtagatgtttactctcacattttgagaaaactctttaatgaatcccatggaatctttgtg
ggcctccagagaattgaagaagaattgactggaaagtccagaaaagctcaattggttcga
gtgagtaaaaactatcgatcagtcataagagcctgtatggaggaaatgcaccagtttgca
attgctgccaaagatccagccagtggtcgccagttcagcagccaggtctccattttgtca
gcgatggagcttatttggaacctgtgtgagattctttttattgaagtggccccagctggc
cctctcctcctccatctcctcgactgggttcgactccacgtgtgcgaggtggacagtttg
tcagcagatgttctgggcagtgagaacccaagtaaacacgagagcttctggaacttggtg
accgtcttggtgctgcaggggcggctagatgaggcccgacagatgctgtccaaggaggcg
gatgccagcccctcctctgcaggcatgtgtcgcatcctgggggacctgatgaggacaatg
cctattctcagtcccggcaacagccagacgctggctgagctggagctgaagtggcagcgc
tggcgcgaggagtgtgagcggcacctgcaggatggcacgtttgcctccagcccccgcctg
gagtcgctctgcaagatcatgttgggggatgaggccgccttgttagagcagaaggaactt
ctgagtaactggtaccatttcctagtgactcggcttctgtactctcatcccacagtaaaa
cccattgacctgcacttctatgcccagtccagcctagacatgtttctgggaggtgagagc
agcccagagcccctggacaacatcttgatggcagcctttgagtttgacatccaccaagtg
atcaaggaatgcagcattgccttgagcaactggtggtttgtggcccacctgacagacctg
ctggatcactgcaggcttctccaggcgcataacctctattttggctccaacatgagagaa
ttcctcctgctagaatatgcctcgggactgtttgctcatcacagtctttggcagctaggg
gtggattactttgactattgccctgaactgggccgagtttccttggagctgcacattgag
cgaatccctctcaacacagagcagaaagccctcaaggtactgcggatttgtgagcagagg
cagatgaccgaacaggtccgcagcatctgtaagatcttagctatgaaggctgtccgcaac
aaccgcctaggctctgccctctcttggagcatccgtgccaaagatgctgcctttgccacc
cttgtgtcagacaggttcctcagggactactgtgagcgaggttgcttttctgacttggac
ctcattgacaatctggggccagctatgatgctcagtgatcgactgacatttctgggaaaa
taccgagagttccaccgactatatggggagaagcgctttggagatgccgcatctctcctg
ctgtctctgatgacttcccagatcgcgccccgatctttctggatgactctgctcacagat
gccctcccacttttggaacagaaacaggtgattttctcagctgaacaaacatatgagctg
atgcgatgcctagaggacttgacctcagggaagccagagcgtgcagaccctgatgcccag
cgactacaggacgacgatatagagaccactaaggtggaaatgctgagacttgctctggca
cggaatcttgctcgggcgattataagagaaggctcgctggaaggttcttga
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