Sciurus carolinensis (gray squirrel): 124980336
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Entry
124980336 CDS
T08117
Name
(RefSeq) X-ray repair cross-complementing protein 5-like isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124980336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124980336
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
124980336
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_PK_bind
Ku_C
Motif
Other DBs
NCBI-GeneID:
124980336
NCBI-ProteinID:
XP_047401758
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All DBs
Position
3:162109273..162198274
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AA seq
732 aa
AA seq
DB search
MAWSGNKAAVVLCMDVGFAMSNSYPGEESPFEQAKKVITMFIQRQVFAESKNEIALVLFG
TDGTENALAGEDQYQNITVHRHLMLPDFDLLEDIESRIQPGSQQADFLDALIVCMDVIQN
ETVGKKFEKRHIEVFTDLSSPFSKDQLDIIIHNLKKFGISLQFFLPFPIGKKDGTGDRGD
GNLYLDLHGPSFPQKGITEQQKEGIQMVKKVMISLEGEDGLDEIYSFRESLRQLCVFKKI
ERRSMPWSCQLTIGSNLSIKIVAYKSIMQEKIKKTWMVVDARSLKKEDIQKETVYCLNDD
DETEVPKEDTIQGFRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCRSSQVQRKFFMGNQ
VLKVFAAKDDEAAAVALSSLVHALDELDMVAVVRYVYDRRANPQVGVAFPYIKDAYECLV
YVQLPFMEDLRQYMFSSLKNNKKFTPTEAQLSAVDALIDSMSLVKKDKEEDTIEDLFPTT
KIPNPEFQRLFQCLLHRALHPQEPLPPIQQHILNMLDPPTEVTAKCQIPLSKIKTLFPLT
EAIKKKDQVTAQDIFQDNHEEGPTAKKCKTEEGETPFSVSNLAEGSVTKVGSVNPAENFR
ALVRQKNASFEEASHQLISHIEQFLDTNETPYFMKSMDCIKTFREEAIQFSEEQHFNSFL
KDLREKVEVKRLNHFWDIVVQDGITLITKDEASGSSVTAEEAKKFLAPKEKPQEDTAAMF
EGGDVDDLLDMM
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggtctgggaataaggcagctgttgtgctgtgtatggatgtgggctttgctatg
agtaactcctatcctggtgaagaatctccttttgaacaagcaaagaaggtgataaccatg
tttatccaacgacaggtgtttgctgagagcaagaatgagattgctttggtcctgtttggt
acagatggcactgagaatgcccttgctggtgaggaccagtatcagaacatcacagtgcac
agacacctgatgctaccagattttgatttgctagaggacattgaaagccgaatccagcca
ggttctcaacaagctgacttcctggatgccctgattgtgtgcatggatgtgattcagaat
gaaactgtaggaaagaagtttgagaagaggcatatcgaagtgttcactgacctcagcagc
ccattcagcaaagatcagctggatattataattcataacttgaagaaatttggcatctcc
ctgcagttctttttgcctttcccaattggcaagaaagatggtactggggacagaggagat
ggcaacttgtacttggacctccatggaccctcctttcctcaaaaaggtattactgaacag
caaaaagaaggcattcagatggtgaaaaaggtgatgatatctttagaaggtgaagatggg
ctggatgaaatttactccttccgtgagagtctgagacaactatgtgtctttaagaaaatt
gagaggcgttccatgccctggtcctgccagctgaccattggctccaatttgtctataaag
atcgtggcctataaatcgattatgcaggagaaaattaaaaagacttggatggttgtggat
gcaagaagcctaaagaaagaagatatacaaaaagaaacagtttattgcttaaatgatgat
gatgaaactgaagttcccaaagaggatactattcaagggttccgctatggaagtgatata
attcctttctctaaagtggatgaggaacaaatgaaatataaatcggaggggaagtgcttc
tctgttttgggattttgtagatcttctcaggtccagagaaaattctttatgggaaatcaa
gttctaaaggtctttgcagcaaaagatgatgaggcagcagcagttgcactttcctccttg
gttcatgccttggatgaattagacatggtggctgtagttcgatatgtttatgacagaaga
gctaatcctcaagttggtgtggctttcccttatatcaaggatgcctatgagtgcttagtg
tacgtgcagctgcctttcatggaagacttgcggcaatacatgttttcatccttaaaaaat
aataagaaatttactcccacggaggcacagttaagtgctgttgatgctttaattgactcc
atgagcttggtaaagaaagacaaggaggaagacactattgaagacttgtttccaaccacc
aagatcccaaatcctgaatttcagagattatttcagtgtctgctgcacagagctttacat
ccccaagagcctctgcccccaattcagcagcatattttgaatatgctagatccccccact
gaagtgacagcaaaatgtcagattcctctctctaaaataaagacccttttccctctgact
gaagccatcaagaaaaaggaccaagtaactgctcaggacattttccaagacaaccatgag
gagggtcccactgctaagaaatgcaagactgaggaaggggaaacccccttcagcgtctcc
aacctggctgaaggcagtgtcacaaaggttggaagtgtgaatcctgctgaaaacttccgt
gctctagtgagacagaagaacgccagctttgaggaagcaagtcaccagctaataagtcac
attgaacagtttttggatactaacgaaacaccgtattttatgaagagcatggactgcatc
aaaaccttccgggaagaagccattcagttttcagaagaacagcacttcaacagtttcctg
aaagaccttcgagagaaagtggaagttaaacgattaaatcatttctgggacattgttgtt
caggatggaatcactctgatcaccaaagatgaagcttctggaagctctgtcacagctgag
gaagccaaaaagtttctggcccccaaagaaaaaccacaggaagacacagcagccatgttt
gaaggtggtgatgtagacgatttactggacatgatgtag
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