Sciurus carolinensis (gray squirrel): 124980361
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Entry
124980361 CDS
T08117
Name
(RefSeq) cilia- and flagella-associated protein 52 isoform X1
KO
K24728
cilia- and flagella-associated protein 52
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124980361
Cilium and associated proteins [BR:
ncar03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
124980361
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_1st
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_NWD2_C
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_SCAP
WDR54
Beta-prop_WDR35_TULP_N
DUF7082
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
124980361
NCBI-ProteinID:
XP_047401797
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Position
3:complement(50330511..50376880)
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AA seq
620 aa
AA seq
DB search
MNEKISPEAEVAELELDAVIGFNGHVPTGLKCHPDQEHLVYPLGCTVLIQAINTHEQRFL
HGHGNNVSCLTISKNGDYIASGQVTFMGFKADIILWDYKKRELIARLSLHKGKIEALAFS
PNDLYLVSLGGPDDGSVVVWSIAQRDAICGSPAAGLNVGNATTVVFSRCRDEMFITAGNG
TIRVWELDLPNRKIWPTECQTGQMKRIAMSITMADDDSFFYLGTTTGDILKMNPRTKLLA
DTGPVKDKYSLGVSAIKCLKMGGLLVGSGAGLLVFCKSPSYKPIKKIQLQGGVTSIALRG
EGHQFFVGTEESHIYRVNFTDFKETLISTCHFEAVQDIVFPFGTAELFATCAKKDIRVWH
TLSNKELLRITVPNMTCHGLDFMRDGKSIISAWDDGKIRAFAPETGRLMYVINSAHRIGV
TAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTAS
TDGTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIREL
EGSLSGSVNGMDITQEGVHFVTGGSDHLVKVWDYNEGEVTHVGVGHSGNITRLRISPGNQ
YIISVSADGAILRWKYPFAS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagaaaatttcgcccgaggccgaagtggccgagctggagcttgatgcggtaatc
ggtttcaatggacatgttcctactggtctcaaatgccatcctgaccaggagcatctggtt
tatcccctgggatgcacagtcctcattcaagcaataaatactcatgagcagagattccta
catggccatggaaacaatgtctcctgtttgactatctccaagaatggagattacattgcc
tctggacaagtcacattcatggggttcaaggcagatatcattttgtgggattataagaaa
agggagttgattgctcggctatcacttcacaagggcaaaattgaagctttggccttttca
ccaaatgacctgtacttggtgtctctgggaggcccagatgatggaagtgtggtggtttgg
agcatagcccagagagacgccatctgtggcagtcctgcagctggcctcaacgttgggaat
gccaccactgtggtgttctccaggtgccgggatgagatgttcattactgctggaaatggg
acaattcgagtatgggaactggatctcccaaacagaaaaatctggccaactgagtgccaa
acaggacagatgaaaagaatagccatgagtattacaatggctgatgatgacagttttttc
taccttggcaccacaactggagatattctaaaaatgaaccccaggaccaaacttctggca
gacactggacctgtgaaagacaagtacagtttaggagtgtcggccatcaaatgcctgaag
atggggggtttgttggtaggctctggagccggattgctggtcttctgtaaaagccccagc
tacaaacccatcaagaaaattcagttacaaggtggcgtcacttctattgccctgagagga
gaagggcaccagttttttgtaggaacagaagaatcacacatttatcgtgtcaacttcaca
gatttcaaagagactcttatttcaacatgccactttgaagctgtccaggacattgtcttt
ccatttggcactgctgagctgttcgccacctgtgccaagaaagacatcagggtgtggcac
acgttgtccaacaaggagctgctgcggatcactgtgcccaacatgacctgccatggcctc
gatttcatgagagatggcaagagcatcatttcagcgtgggacgacgggaaaatccgagcc
ttcgcccctgagacaggccggctgatgtatgtcatcaacagcgctcacaggatcggagtg
actgccatcgctaccaccagtgactgtaaaagggtcatcagtggcggtggggaaggggag
gtgagggtgtggcagataggatgccagacccagaaactggaggaggccctaaaggagcac
aagtcctctgtgtcctgcatccgggtgaagaagaacaacgaggagtgtgtcaccgccagc
actgatgggacttgcatcatttgggaccttgtgcgtcttaggagaaatcagatgatcctg
gccaataccctattccagtgtgtgtgttatcatcctgaagaattccaaatcatcaccagt
gggacagatagaaagattgcttactgggaagtatttgatgggtcagtaatcagagagttg
gaaggttccttgtctgggtcagtaaatggtatggatatcacacaggaaggagtgcacttt
gtcacaggtggaagtgaccatctggttaaagtttgggattataacgagggggaagtgact
cacgttggtgtgggacacagtggcaatatcacgcgcctccgcatcagtcctggaaatcag
tacatcattagcgtaagtgcagatggagccattttgcgatggaagtacccgtttgcctcc
tga
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