KEGG   Sciurus carolinensis (gray squirrel): 124980729
Entry
124980729         CDS       T08117                                 
Name
(RefSeq) polyubiquitin-B
  KO
K04551  ubiquitin B
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar04120  Ubiquitin mediated proteolysis
ncar04137  Mitophagy - animal
ncar04140  Autophagy - animal
ncar05012  Parkinson disease
ncar05022  Pathways of neurodegeneration - multiple diseases
ncar05167  Kaposi sarcoma-associated herpesvirus infection
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124980729
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    124980729
   04137 Mitophagy - animal
    124980729
 09160 Human Diseases
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    124980729
  09164 Neurodegenerative disease
   05012 Parkinson disease
    124980729
   05022 Pathways of neurodegeneration - multiple diseases
    124980729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ncar04121]
    124980729
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncar04147]
    124980729
Ubiquitin system [BR:ncar04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   124980729
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   124980729
  Exosomal proteins of other body fluids (saliva and urine)
   124980729
  Exosomal proteins of colorectal cancer cells
   124980729
  Exosomal proteins of bladder cancer cells
   124980729
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 124980729
NCBI-ProteinID: XP_047402564
LinkDB
Position
3:43892697..43894984
AA seq 305 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGC
NT seq 918 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctgactggcaagaccatcaccttggaggtggagcccagt
gacaccattgagaatgtgaaggccaagatccaggataaagagggcattccccctgaccag
cagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgactacaac
atccagaaggaatccaccctgcacctggtcctgcgcctgaggggtggtatgcagatcttc
gtgaagaccctgactggcaagaccatcaccctggaggtggagcccagtgacaccattgag
aatgtgaaggccaagatccaggataaagagggcattccccctgaccagcagaggctcatc
tttgcaggcaagcagctggaagatggccgcactctttctgactacaacatccagaaggaa
tccaccctgcacctggtcctgcgcctgaggggtggtatgcagatcttcgtgaagaccctg
actggcaagaccatcaccctggaggtggagcccagtgacaccattgagaatgtgaaggcc
aagatccaggataaagagggcattccccctgaccagcagaggctcatctttgcaggcaag
cagctggaagatggccgcactctttctgactacaacatccagaaggagtctaccctgcac
ctggtcctgcgcctgaggggtggtatgcagatcttcgtgaagaccctgactggcaagacc
atcaccctggaggtggagcccagtgacaccattgagaatgtgaaggccaagatccaggat
aaagaaggcattccccctgaccagcagaggctcatctttgcaggcaagcagctggaagat
ggccgcactctttctgactacaacatccagaaggagtccaccctgcacctggtcctgcgc
ctgaggggtggctgttaa

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