KEGG   Sciurus carolinensis (gray squirrel): 124980787
Entry
124980787         CDS       T08117                                 
Name
(RefSeq) ubiquitin-like
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03010  Ribosome
ncar04120  Ubiquitin mediated proteolysis
ncar04137  Mitophagy - animal
ncar04140  Autophagy - animal
ncar05012  Parkinson disease
ncar05022  Pathways of neurodegeneration - multiple diseases
ncar05167  Kaposi sarcoma-associated herpesvirus infection
ncar05171  Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    124980787
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124980787
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    124980787
   04137 Mitophagy - animal
    124980787
 09160 Human Diseases
  09172 Infectious disease: viral
   05171 Coronavirus disease - COVID-19
    124980787
   05167 Kaposi sarcoma-associated herpesvirus infection
    124980787
  09164 Neurodegenerative disease
   05012 Parkinson disease
    124980787
   05022 Pathways of neurodegeneration - multiple diseases
    124980787
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:ncar03011]
    124980787
   04121 Ubiquitin system [BR:ncar04121]
    124980787
Ribosome [BR:ncar03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    124980787
  Archaea
    124980787
Ubiquitin system [BR:ncar04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   124980787
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Dsc3_N TBK1_ULD Rad60-SLD_2 Ubiquitin_5 DUF2604 OTU1_UBXL
Other DBs
NCBI-GeneID: 124980787
NCBI-ProteinID: XP_047402653
LinkDB
Position
3:115937517..115937909
AA seq 125 aa
MQIFVKTLMCKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGCTLSDYN
IQKESTLHLVLCLRGGIIEPSLHQLAQKYNCDKMICPKCYARQHLRAVKKKCGHTNNLCP
RNKVK
NT seq 378 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagaccctgatgtgcaagaccatcaccctcgaggttgagcccagt
gacaccattgagaatgtcaaagccaaaattcaagacaaggagggcatcccatctgaccag
cagcgtctgatttttgcgggcaaacagctggaggatggctgcactctctcagattacaac
atccagaaagagtccaccctgcacttggtgctttgcctgcgaggtggcatcattgagcct
tccctgcaccagcttgcccagaagtacaactgtgacaagatgatctgtcccaagtgttat
gcccgccagcacctccgtgctgtcaagaagaagtgtggtcacaccaacaacctctgccct
aggaataaggtcaaataa

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