Sciurus carolinensis (gray squirrel): 124980927
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Entry
124980927 CDS
T08117
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03030
DNA replication
ncar03420
Nucleotide excision repair
ncar03430
Mismatch repair
ncar03440
Homologous recombination
ncar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124980927
03420 Nucleotide excision repair
124980927
03430 Mismatch repair
124980927
03440 Homologous recombination
124980927
03460 Fanconi anemia pathway
124980927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124980927
03032 DNA replication proteins [BR:
ncar03032
]
124980927
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124980927
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124980927
DNA replication proteins [BR:
ncar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124980927
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124980927
MMR (mismatch excision repair)
124980927
DSBR (double strand breaks repair)
HR (homologous recombination)
124980927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Ubiquitin_At1g33420
Motif
Other DBs
NCBI-GeneID:
124980927
NCBI-ProteinID:
XP_047402949
LinkDB
All DBs
Position
3:complement(61544524..61592173)
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMDLEVLKSAETVGLKIGNPVPYNE
GHGQQQVVPSPISAVNPPTSKPQQQNGNSGVGSTASKAFGASKTFGKPGGTSLSHPSGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVMPCEDDHHLPTVQF
DFTGISDLENKPKDSLVDIIGICKSYEDATKITIKSNNREVSKRSIYLMDMSGKVVNATL
WGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGIGGGNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFANFKYRMILSANIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
DYGRRLIMNIRRNAAM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggttggccacttgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacccattctccaggtcattaacatccgtcccattacaacagggaatagtccaccc
cgttatcgactgcttatgagtgatggattgaacactctatcatcttttatgttggcaaca
cagttgaaccctcttgttgaggaagaacgattgtccagtaattgtatttgccagattaat
cgatttattgttaacactctgaaagatgggaggagagtagttattttgatggacttagaa
gttttgaaatcagctgaaacagttgggttgaaaattggcaatccagtgccctataatgaa
ggacatgggcagcagcaagtagttccttctcccatctcagcagtcaatccaccaaccagc
aaaccccagcaacagaatgggaactcaggagtgggttccactgcatctaaggcttttggt
gcctcaaagacttttggaaaacctggaggaaccagcctatcacatccttctggggggaca
caatccaaagtggtacccatcgccagcctcactccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagtcagatccgtacctggagcaattctcgaggagaagggaaa
cttttctctatagaactagttgatgaaagtggtgaaatcagagctactgctttcaacgag
caagtggacaagttctttccccttattgaagttaacaaggtgtattatttctcaaaaggc
accctgaagattgctaacaaacaattctctgctgttaaaaatgactatgagatgactttc
aataatgagacttctgtcatgccctgtgaagatgaccaccatttacctacggttcagttt
gatttcacggggatcagtgatttagagaacaagcctaaagactcacttgtagacataatt
ggtatctgcaagagctatgaagatgctactaaaatcacaataaagtctaacaacagagaa
gtttctaaaagaagtatctatttaatggacatgtcagggaaagtggtgaatgctactctg
tggggagaagatgctgacaagttcgatggttctagacagcccgtgatggcgattaaagga
gccagagtttccgattttggtggacggagcctttccgtattgtcttcaagcactatcatt
gtgaatcctgacatcccagaggcctataaacttcgtggttggtttgactcagaaggacaa
gccttagatggtgtttccatctctgatctgaagagtggaggaataggaggaggcaacacc
aactggaaaaccttatatgaggttaaatcagagaatctgggccaaggtgacaaggcagac
tattttagctctgtggcaacagtggtgtatcttcgcaaagagaactgtatgtaccaggct
tgcccaactcaggactgcaacaagaaagtgattgaccaacagaatggattataccgctgt
gaaaagtgtgacagtgaatttgccaattttaaataccgcatgatcttgtcggcaaatatt
gcagattttcaagaaaatcagtgggtgacttgtttccaggagtctgctgaagctatcctc
ggacaaaacactgcttatcttggggaattaaaagagaagaatgagcaggcatttgaagaa
gttttccagaatgccaactttcgatctttcacattcagaatcagggtcaaactcgaaacc
tacaatgatgagtctcgaattaaggccaccgtgatggatgtgaagcctgtggactacaga
gactatggcagaagactgatcatgaacatcaggagaaacgcagcgatgtag
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integrated database retrieval system
