Sciurus carolinensis (gray squirrel): 124980937
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Entry
124980937 CDS
T08117
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124980937
09124 Replication and repair
03420 Nucleotide excision repair
124980937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124980937
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124980937
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124980937
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124980937
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124980937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
124980937
NCBI-ProteinID:
XP_047402970
LinkDB
All DBs
Position
3:71838599..71863729
Genome browser
AA seq
789 aa
AA seq
DB search
MGKRDRADRGERRHGRDKKKSKKRHYEDEEEDEEDTPGNDSQEAVPSAAGKQVDETGTKV
DEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHV
HEYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHN
RYFVESSHPDVIQHLLQDPVIRECRLRNAEGEATELITETFTSKSAISKMADGGSGPSTS
RVTDPQGKSDIPTDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLA
EYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTA
ACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSML
GHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVRE
DDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILL
YTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQIL
QNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAE
EYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELAFSTKEEQQQLL
QKVLAATDLDAEEEVVAGEFGSKSNQASRRFGTMSSMSGADDTVYMEYHSSRSKASTKHV
HPLFKRFRK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagagaccgggcggaccgcggtgagaggaggcacgggcgcgacaagaagaag
tccaagaagcggcactatgaggatgaagaggaagatgaagaggacacccctggaaacgac
tctcaggaggcagttccctcggcggccgggaaacaggtggatgagaccgggaccaaagtg
gatgaatatggagccaaggactacaggttgcagatgccattgaaggacgaccacacctcc
aggcccctgtgggtggctcctgatggccacatcttcttggaagctttctctccagtttac
aaatatgctcaagacttcctggtggctattgcagagccagtgtgccgaccaacccatgta
catgagtacaagctaactgcctactccttgtatgcagctgtcagtgttgggctgcaaacc
agtgacatcactgagtacctcaggaagctcagcaagactggagtccctgatggaattatt
cagtttattaagttgtgtactgtcagctatgggaaagtcaagctggtcctaaaacacaac
aggtactttgttgaaagttcccaccctgatgtcatccagcatcttctccaagacccagtg
atccgtgaatgccgcctgaggaatgctgagggggaggccactgaactcatcacagagact
ttcacaagcaaatctgccatttctaagatggcagatggcggcagtgggccttccacttcc
cgggtgacagatccacagggtaaatccgacatccccacggacctgtttgacttttatgag
caaatggacaaagatgaagaagaagaagaagagacacagacagtatccttcgaagtcaag
caagaaatgattgaggagcttcagaaacgttgtatccacttggagtaccctctgttagca
gaatatgacttccggaatgattctgtcaaccctgatataaacattgacctgaaacccaca
gctgtcctcagaccctatcaggagaagagcctgcggaagatgtttgggaatggacgtgca
cgttcaggggtcattgttcttccttgtggtgctgggaagtccctggttggtgtgactgct
gcgtgcactgtcagaaagcgctgtctggtgctgggcaactcggctgtgtctgtagagcag
tggaaagcccagttcaagatgtggtccaccattgatgacagccagatctgccgcttcacc
tctgatgccaaagacaagcccataggctgttccattgccattagcacttattccatgctg
ggccacactaccaagaggtcctgggaggctgagcgagtcatggagtggcttaaaacacag
gagtggggccttatgatcctagatgaagtgcacactattccagccaagatgttccgacgg
gtgctcaccattgtgcaggcccactgcaagctgggtttgactgcaacccttgtccgggaa
gatgacaaaattgttgacttaaattttctgattgggcccaagctttatgaagccaactgg
atggagctgcagaacaatggctacatcgccaaagtccaatgtgctgaggtttggtgcccg
atgtctcctgagttttaccgggaatatgtggcaatcaaaactaagaaacgaatcttgctg
tacaccatgaaccccaacaagttcagagcttgccagtttctgatcaagtttcatgaaagg
aggaatgacaagattattgtctttgctgacaacgtgtttgccttgaaggaatatgctatt
cgtctgaacaaaccatatatctatgggcctacatcccagggagaaagaatgcaaattctt
cagaatttcaagcacaaccccaaaatcaataccatctttatatccaaggtaggtgacaca
tcctttgatctaccagaagcaaatgtcctcattcagatctcatcccatggtggctccagg
cggcaggaggcccagaggctagggcgggtgcttcgagccaaaaaagggatggttgcagag
gagtacaatgccttcttctactcactggtgtcccaggacacacaggaaatggcttactct
accaagcgacagagattcttggtagatcaaggttatagctttaaggtgatcacaaagctt
gctggcatggaggaagaagagttggcattttccacaaaagaggagcaacagcagctccta
cagaaagtcctggcagccactgacctagacgcagaggaggaggttgtggcaggagaattt
ggctccaagtccaaccaggcgtcccggcgctttggcaccatgagctccatgtccggggct
gatgacactgtgtacatggagtaccactcatcaaggagcaaagcttccactaagcatgtg
cacccactttttaagcgctttcggaaatga
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