Sciurus carolinensis (gray squirrel): 124981244
Help
Entry
124981244 CDS
T08117
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124981244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124981244
04121 Ubiquitin system [BR:
ncar04121
]
124981244
03036 Chromosome and associated proteins [BR:
ncar03036
]
124981244
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124981244
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124981244
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
124981244
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124981244
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
124981244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4
zf-C3HC4_2
NIBRIN_BRCT_II
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
124981244
NCBI-ProteinID:
XP_047403444
LinkDB
All DBs
Position
3:complement(160914839..161004973)
Genome browser
AA seq
775 aa
AA seq
DB search
MPGSRQPRVRSGNAPRPALAMEPAGDGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGG
CEHIFCSDCVSDCIGTGCPVCYTPAWILDVKINRQLDSMIQLCSKLRNLLHDNKLSDLKE
ETSRTSLFNDLENKKKSIKMWFSPRSKKVRYVVSKVSVQTQPQKIKDEAPQQTSMYEFVS
SSPPVVVPKRAKKASATSAKKQKKKTLAEINQQWNLESEKEAGELDSKEEFKEKLVSFCS
QPSVITSPQINGEIDLLASGSGTESECFGSLTEVSLPLAEHIESPDPERKSEMTPEEKVR
DSDLITKAALLSGPPVKRGCCSRPSGSLSKRCKSSIPSISGDFVKQTVLSENIPLLDCSS
PPSSKLEADDTMKRRNSNISDDSISLSPCTPPSTLNCSSYRRMMLSPSAVKLSPSSLMVG
KRNHRGETLLHIASIKGDVPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ
HKALVNTTGYQNDSPLHDAARNGHMDIVRLLLSYGASRNAVNIFGLRPVDYTDNENMKSL
LLLPEKNVSSSTSHCSVVNTGQRRDGPLVLIGSGLSSEQQKMLSELAAVLKAKKCAEFDS
TVTHVIVPGDEVQSTLKCMLGILNGCWVLKFEWVKASLQKKVCEREEKYEIPEGPQRSRL
NREQLLPKLFDGCYFYFGGTFKHHPKDNLIKLVTAAGGQILSRKPKPDSDVTQTINTVAY
HAKPDSDQRFCTQYIIYEDLSNYRPERVRQGKVWMAPSSWFIDCVMSFELLPLDS
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcagccggcagcccagggtccgctccgggaacgcgcctcgcccggcgctcgcc
atggagccggcgggtgacggggcctgggcccacagccgtgctgcgctcgaccgcctggag
aagctgctgcgctgctcgcgctgcactaatattctgagggaacctgtgtgtttaggaggg
tgtgagcacatcttctgtagtgattgtgtaagtgactgcattggaactggatgtccagtg
tgttataccccagcttggatactagatgtcaagataaacagacagttggacagcatgatc
cagctctgtagtaagctccggaacttgctacatgacaataagctttcagatttgaaagaa
gagacatctagaacaagtttatttaatgatttggaaaacaagaagaaatcaataaaaatg
tggtttagtcctcgaagcaagaaagtcagatatgttgtgagtaaagtttcagtgcaaacc
cagcctcaaaaaataaaagatgaagcccctcagcaaacctcaatgtatgaatttgtttct
tcaagtcctcctgtagttgttcctaagagggctaaaaaggcttctgcgacatctgcaaag
aagcaaaaaaagaaaactttagctgaaataaaccaacaatggaatttagagtcagaaaaa
gaagctggtgaacttgactccaaagaggaatttaaggaaaaactggtatccttctgtagc
caaccatcggttatcactagcccacagataaatggtgaaatagacttactagcaagtggc
tctggaactgaatctgaatgctttggaagcttaacagaggtctctttaccattggctgag
catatcgagtctccagaccctgagaggaagagtgagatgactcctgaggagaaggtccgt
gacagtgatcttataactaaggcagctttactgtcaggtccccctgtcaaacgtggatgt
tgcagcagaccttctggctctctttctaagagatgtaaaagcagcattccaagcatcagt
ggagattttgttaagcaaacagtgctctcagaaaatatcccattgcttgactgttcctca
ccaccttctagcaaacttgaagctgatgacacgatgaagaggagaaacagtaatatatca
gatgactctattagcctttcaccatgtacaccaccgtctacactcaactgttcaagttat
agacgaatgatgttgagcccttctgcagtgaagctgtcgcccagtagccttatggttggg
aaaagaaaccatagaggagaaactttgcttcatattgcttctatcaagggtgacgttcct
tctgttgaatacctcttgcaaaatggaagtgacccgaatgttaaagaccatgctggatgg
acaccattgcatgaagcctgtaatcatgggcacctgaaggtagtggaattgctgctccag
cataaggcattggtgaacaccactggctaccagaatgactcgccacttcatgatgctgct
aggaatgggcacatggatatagtcaggttgttactgtcctatggagcttcccggaatgca
gttaacatatttggtctgaggcctgtggattatacagacaatgaaaatatgaaatcatta
ttgctgctaccagagaagaatgtatcatcctcaactagccattgctcggtcgtgaacact
gggcagcgcagagatggaccgcttgtgcttataggcagtgggctttcttcagaacaacag
aaaatgctcagtgaacttgcggcagttcttaaggctaaaaaatgtgctgagtttgacagt
acagtaactcatgtcattgttcctggtgacgaagttcagagtactctgaagtgtatgctt
ggaattctcaatggttgttgggtcctaaagtttgaatgggtgaaagcctctctacaaaag
aaagtatgtgaaagggaagaaaagtatgaaattcctgaaggcccacagagaagcaggctc
aacagagaacagctgttgccaaagttgtttgatggatgctacttctattttgggggaacc
ttcaaacatcatccaaaggacaaccttattaagcttgttactgcagcagggggccagatc
ctcagtagaaaacctaagccagacagtgacgtgacacagaccatcaatacagttgcttat
catgccaaacccgattctgatcagcgcttctgcacacagtatatcatctatgaggatttg
tctaattatcgcccagaaagggttcgtcagggcaaagtctggatggctccttcaagctgg
tttatagactgtgtgatgtcctttgagttacttcctcttgacagctga
DBGET
integrated database retrieval system
