Sciurus carolinensis (gray squirrel): 124981321
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Entry
124981321 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: glucosylceramide transporter ABCA12-like
KO
K05646
ATP-binding cassette, subfamily A (ABC1), member 12
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124981321
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ncar02000
]
124981321
Transporters [BR:
ncar02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124981321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
DUF4162
Motif
Other DBs
NCBI-GeneID:
124981321
NCBI-ProteinID:
XP_047403576
LinkDB
All DBs
Position
3:complement(161110870..161279690)
Genome browser
AA seq
2598 aa
AA seq
DB search
MASQFRQLRILVWKNWLGVKRQPLWTLVLILWPVIIFIILAITRTKFPPTAKPTCYLAPR
NLPSTGFFPFLQTLLCDTDSKCKDTPYGPLDLLRRKGINDAMFKDSEILKKSPKLGKDSN
LSLQSTQVPERRHASLATVFPSLSSDLEDAETGTFNGSLVLARILDLEKLLKQNSTSEEV
RREVCESYPGYSPQYTFSWSTLGKNVFNKFCLSNMTLLESSLEELKNQFSQISSDPNNQK
RVFQEIVQVLSFFSQVQEQATLWQLLSSFPNMFQNDTSLSSLFDVLRKADRALLVLQKVY
PRVETHDGFRTLQKSVKHLLYTLDSPALGDSDNTTHLWSDDDGQTLSPSSLAAQLLILEN
FEDAILNISSHSPYFPYLACVRNVTDDLARGSSENLRLLQSTIRFKKSFLRNGSYEDYFP
PVPEILKSKLSQLRNLTELLCESETFNSIEKSCQLSNMSFGSLCEDSAFHVQLLEAAELG
TEIATSLLYHDNIISAKLRDLLTGDPSKINLNMDRFLEQALQMNYLENITQLIPTIEAML
HVNNSADASEQPDQLIEMFRNVEELKEELRRITVMSNTSINKLLAIPIPDNRAEIISRVF
WLHSCDANISNPKLEDAMKEFCSLPPRERSHQSYLIGLTLLHYLDIYNFTYKVFFPRKDQ
KPVEKMIELFIRLKEILNQMASGTHPLLDKMKSLKQIHLPRSTPLTQGMYRSNRVNTPQG
SFSTISQALCSQGITTDYLTAMLPSSQRPKGNHTKDFLTYKLSKEQIAEKYGIPLHTTPF
CFSLYKDIINMPAGPVIWAFLKPMLLGRILYAPYNPVTQAIMEKSNVTLRQLAELRXKSQ
EWMDKSPIFMNSFNLLNQAIPMLQNTLRNPFVQVFVKFSVGLDAVELLKQIDELDVLRLK
LENNIDIIDQLNTLSSLTVNISSCVLYDRIQGSKTIDEMEREAKRLYKSNELFGSVIFKL
PSNRSQHRGYDSENVSLPPVVKYTIRMSLKTAQTTRSIRTKIWAPGPHNSPSHNQIYGRA
FIYLQDSIERAIIELQTGRNSQEIAVQVQAIPYPCFMKDNFLTSVSYSLPIVLMVAWVVF
IAAFVKKLVYEKDLRLHEYMKMMGVNSCSHFFAWLIESVGFLLVTITILIIILKFGNILP
KTNGFILFLYFSDYSFSVIAMSYLISVFFNNTNIAALIGSLIYVIAFFPFIVLITVEDEL
SYVVKVFVSLLSPTAFSYASQYIARYEEQGVGLQWENMYSSPVQDDTTSFGWLCCLILAD
SFIYFLIAWYVRNVFPGTYGMAAPWYFPILPSYWKERFGCAEVKHEKSNGLMFTNIMMQN
TNPSASKTSPEYMLPSNIEPEPKDLPVGVALHGVTKIYGSKVAVDNLNLNFYEGHITSLL
GPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLDSVRKNMGVCMQHDVLFSYLTTKE
HLLLYGSIKVPHWTKKQLHEEVKRTLKDTGLYSHRHKRVGTLSGGMKRKLSISIALIGGS
RVVILDEPSTGVDPCSRRSIWDVISKNKTARTIILSTHHLDEAEVLSDRIAFLEQGGLRC
CGSPFYLKEAFGDGYHLTLTKKKSPNLDANAMCNTMAVTAMIQSHLPEAYLKEDIGGELV
YVLPPFSTKVSGAYLSLLRALDQGMGDLNIGCYGISDTTVEEVFLNLTKESQKNSAMSLE
HLTQKKIGNSSTNGISTPDDLSVSSSNFTDRDDKVLTRGERLDGFGLLMKKILAILIKRF
HHTRRNWKGLIAQVVLPIVFVTTAMGLGTLRDSSNSYPEIQISPSLYGTHEQTAFYANSH
PSTKGLVSAMWDFPGIDNVCLNASDSRCLKKDNLERWNTSGEPITNFGVCSCSENVQECP
KFNYSPPHRRTYSSQVIYNLTGHHMENYLISTANQFVQKRYGGWSFGLRLTNDLRFDITA
VPANRTLAKVWYDPEGYHSLPAYLNSLNNFLLRVNMSNYDAARHGIIMYSHPYPGVQDQE
QATISSLIDILVALSILMGYSVTTASFVTYVVREHQTKAKQLQHISGIGVTCYWVTNFIY
DMVFYLVPVAFSIGVIAIFKLPAFYSESNLGAVSLLLLLFGYATFSWMYLLAGLFHETGM
AFITYVCVNLFFGINSIVSLSVVYFLSKEKPNDPTLELISETLKRIFLIFPQFCFGYGLI
ELSQQQSVLDFLKAYGVQYPSETFEMDKLGAMFVALVSQGTMFFLLRLLINEWLIKKLRL
FFRKFSSSPVAETIDEDEDVRAERLRVESGAAEFDLVQLHRLTKTYQLIHKKIIAVNNIS
IGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKTGSLGHVDSHSSLVGYCP
QEDALDDLVTVEEHLYFYARVHGIPENDIKETVHKLLRRLHLMPYKDRATSMCSYGTKRK
LSTALALIGKPSILLLDEPSSGMDPKSKRHLWKIISEEVQNKCSVILTSHSMEECEALCT
RLAIMVNGRFQCIGSLQHIKSRFGRGFTVKVHLKNNKVSMETLTRFMQLHFPKTYLKDQH
LSMLEYHVPVTAGGVANIFDLLETNKAALNITNFLVSQTTLEEVFINFAKDQKSYVNADT
SSQGSTVSLDSQDDRIES
NT seq
7797 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccagtttcgtcaacttcggatcctggtgtggaaaaattggctaggggtcaaa
aggcagccgctttggacacttgtcttaatcttatggccagtcattattttcataattttg
gctattacccggaccaaatttcctccaacagcaaaaccaacttgttacctggcacctcga
aaccttcctagtactggattcttcccattcctacaaaccctactctgtgacacagactct
aaatgcaaagacacaccctatgggcctctagatctgctccggaggaaagggatcaacgac
gccatgtttaaagacagtgaaattctgaaaaagtcacccaagctggggaaggacagtaat
ttatcactccagagcacccaagttccagagagaaggcacgcatcattggctacggtattt
cctagtctgagttctgatttggaagatgctgaaacaggaactttcaatggcagtctagtg
cttgcacggatccttgatttggaaaagctattaaagcagaactcaacatcagaagaagta
agaagagaagtgtgtgagagctatccaggatacagtccacaatacaccttctcttggagc
actctaggaaaaaatgtttttaataaattttgcctttccaacatgacccttttagagtct
tctcttgaggaactgaaaaatcagttctctcagatctcaagtgaccccaacaatcagaag
agagtgttccaggaaatagtccaagtgctgtccttcttctcacaagtgcaggaacaggca
accctgtggcagctcctctctagctttccaaatatgtttcagaatgacacctcactcagc
agtctatttgatgttcttcgaaaggcagacagggcgctgctggtcctgcagaaggtttat
ccacgtgttgaaactcacgacggtttcagaacccttcagaagtctgttaagcatctgctc
tacactctggactccccagctctaggtgactctgataacacaacacacctgtggagtgat
gatgatggacagacactgtccccaagcagtctggctgctcagcttcttatcctggaaaac
tttgaagatgccatcttaaatatatcatcacatagtccttattttccttacttggcctgc
gtgagaaacgtgactgacgatctggccaggggctcatcagaaaatctgaggcttctgcag
tccacgattcgatttaaaaaatcttttctccgaaatggttcctatgaggattacttccct
ccagttcctgaaatcctaaaatcaaaactgtctcaacttcgaaacttgaccgaacttctt
tgtgaatcagaaactttcaattcaatagagaaatcatgccagctctctaatatgagcttc
gggagtctatgtgaagacagtgcatttcacgtgcaacttttggaagcagcagagctgggc
acagaaatagcaaccagcttactgtaccatgacaatatcatatctgcaaaactgagggat
ttgctaactggggatccgagcaaaattaatttaaatatggatcggttcctggaacaggca
ttgcaaatgaattacttggaaaatatcacacagttaataccgaccatagaggccatgctg
catgtcaataacagtgcagatgcttctgagcaaccagatcagttaatagaaatgtttaga
aatgtagaagaactgaaggaagaactgaggagaataacagtgatgtccaatacaagcatc
aacaagttactagctattcctatccctgataacagagctgagattatttctcgggtgttc
tggttgcattcttgtgatgccaatatcagcaatcccaaacttgaagatgctatgaaggaa
ttctgcagtctgcctcctcgagagagatctcaccagtcttacctcattgggctcactctt
ctgcactacttggacatttacaacttcacatataaggtgtttttccctaggaaagatcaa
aaaccagtagaaaagatgatagaactcttcataagactgaaagagattctcaatcagatg
gcttccggcacacatccgctgctagacaaaatgaaatccctgaaacaaatccatctgccc
agaagcactccattaacacagggaatgtacagaagcaatcgagtgaatacaccccaagga
tcatttagtaccatctcccaggcattgtgttcccaaggaattaccactgactacttgact
gctatgttaccctcttcccagaggccaaaaggcaaccacaccaaggactttttgacttat
aaattaagtaaagagcaaattgctgaaaaatatggaattcccttacataccactccattt
tgcttttccctttacaaagacatcattaatatgcctgctggacctgtgatttgggctttc
ttgaaacccatgttgttgggaaggattttatatgcaccatataacccggtcacacaagcc
ataatggaaaagtctaatgtaacactgaggcagctggcggaattaagangaaaatctcaa
gagtggatggataagtcaccaattttcatgaattccttcaacttgttgaaccaggcaatt
ccaatgctccagaatactttaaggaacccctttgtgcaagtttttgtcaagttctccgtg
ggacttgatgctgttgagctactaaaacagatagatgaacttgatgttctcaggctgaaa
ttagagaacaacattgacatcattgatcagcttaacaccctctcttccctgacagtaaat
atttcctcttgtgtgttatatgaccgtattcagggatcaaaaaccatagatgaaatggag
agagaggccaaaaggctctacaaaagcaatgaactctttggaagtgttatttttaagctt
ccttctaacagaagccagcatagaggctatgattctgaaaatgtctctcttcctcctgtc
gtaaaatataccatccgcatgagcctcaagaccgcccagaccaccaggagcataagaacc
aagatttgggccccagggccacacaattctccatcacacaaccagatctatggcagggcc
ttcatttatttacaggatagtattgaaagagcaatcattgaattgcaaacaggaaggaac
tcacaggaaatagctgtccaggtccaagcgattccttatccctgcttcatgaaggacaac
ttcctaaccagtgtctcttattctcttccaattgtgctcatggttgcctgggttgtattt
atagctgcttttgtaaaaaagcttgtttatgagaaagacctccggcttcatgagtacatg
aagatgatgggtgtgaactcctgcagtcatttttttgcctggcttatagagagtgttgga
ttcttactggttaccatcaccattctcatcattatactcaagtttggcaacattcttcct
aaaacaaatgggttcattttgttcctgtatttttcggactacagcttctccgttattgcc
atgagctatcttatcagtgtcttcttcaacaacaccaacattgcagctctgattggaagc
ctcatctacgtcattgctttctttccatttattgttctgattacagttgaggatgagttg
agctatgtagtgaaagtatttgtgagcctgctgtccccaacagcattcagctatgcaagt
caatatattgcacgctatgaagagcaaggtgttggtcttcagtgggaaaatatgtatagt
tcccctgtccaggatgataccacctcatttggctggctgtgctgtctaatccttgctgac
tctttcatttatttcctcattgcttggtatgtcaggaatgttttcccagggacatacggt
atggcagctccttggtattttccaatccttccttcctactggaaggagcgatttggctgt
gcagaggtgaagcatgagaaaagcaatggtcttatgttcaccaacatcatgatgcagaac
accaacccatctgccagtaagacaagtcctgaatacatgttaccctccaacattgagcca
gaacctaaagatctcccagtaggagttgccctgcacggagtcacaaagatctatggctcc
aaagttgctgttgataacctcaatctgaacttttatgaagggcacattacttcattgctg
gggcccaatggagctggaaaaaccactaccatctccatgttgactggactgtttggtgcc
tcagcaggcaccatctttgtgtatggaaaagatattaaaacagaccttgactctgttcgg
aagaacatgggggtctgcatgcagcacgatgtcctgttcagttacctcactactaaagaa
caccttctcttatatggctccatcaaagttcctcactggactaaaaagcaactccacgag
gaagtaaaaaggactttaaaggacactggactgtatagccatcgtcataagagagttgga
acgttgtcaggaggaatgaagaggaagctgtcgatatccatagctctcatcggtggatcc
agagtagtaattttggatgaaccatccacaggggttgatccctgttctcgtcgaagtata
tgggatgtgatatccaagaacaaaactgccagaacaatcattctgtcgacgcaccacttg
gatgaggctgaagtgctgagtgaccgcatcgctttcctggagcagggtgggctccggtgc
tgtgggtcgccgttttacctcaaggaggcttttggggatggatatcacctcacgctcacc
aagaagaagagtccaaatctagacgcaaatgcgatgtgtaacaccatggctgtgacagca
atgatccagtcgcacctcccagaagcctacctcaaggaggacatcggaggcgagcttgtt
tatgtgctccctcccttcagcaccaaagtctcaggagcctacctgtcgctcctgagagcg
ctggaccagggcatgggcgacctcaacatcgggtgctacggcatttcagacaccaccgta
gaagaggtctttctgaacttgactaaggagtcacaaaaaaatagtgctatgagtcttgag
cacctaactcaaaagaaaattgggaattccagtaccaatggcatctccactcctgatgat
ttatctgtgagcagtagcaacttcacagacagagatgacaaagtcctgacaagaggagag
aggctggatggttttggactgctaatgaagaagatcctagctattctcataaagaggttc
caccacacccgcaggaactggaaaggcctcattgcccaggttgttcttcccattgtcttt
gtgaccactgccatgggcctgggcacgctgagagattccagcaacagttatccagagatc
cagatctccccctctctctatggtacccatgaacagaccgccttctatgcgaattctcac
ccaagcacaaaaggactagtctcagcaatgtgggatttcccgggcattgacaatgtgtgt
ctgaacgccagtgattcacggtgtttaaagaaagacaatctggaaagatggaacaccagt
ggagaacctattactaattttggtgtttgttcctgctcagaaaatgtccaggaatgtcct
aaatttaactattctccacctcatagaagaacttattcttctcaagtaatttataatctc
actgggcaccacatggaaaattatcttatatcgactgccaatcagtttgtccaaaaaaga
tatggaggttggagttttggactgcgtttgactaatgaccttcgttttgatataacagca
gttcctgccaatagaacacttgccaaggtgtggtatgatccagaaggctatcattccctt
ccagcttacctcaacagcctgaataatttcctccttcgagttaacatgtcaaactatgat
gctgcccggcatggcatcatcatgtacagccatccttatccaggcgtgcaagaccaggag
caagccacaatcagcagtttaatcgatattttagtggcactgtccatcctgatgggttat
tctgtcaccaccgccagctttgtcacctatgttgtaagggaacatcagaccaaagccaag
cagttgcagcacatttcgggcattggtgtgacgtgctactgggtaacaaacttcatttat
gatatggtcttctacttggtccctgtagcattttcaattggtgtcattgcaattttcaag
ttacctgccttctacagtgaaagcaacctaggcgctgtttctctcctccttctgctgttc
gggtatgccacattttcttggatgtacttgctggctggtctctttcatgaaacaggaatg
gccttcatcacttacgtctgcgtcaacctgttttttggcatcaattccattgtttccctg
tcggtggtttacttcctatccaaggaaaagcctaatgatccgactttagaacttatttct
gaaaccctcaagcgaattttcctgatttttccgcaattctgttttggctacggtttgatt
gaactatcacaacaacagtcagttctggacttcttaaaagcatatggagtacaataccca
agcgaaacctttgaaatggataaactcggtgcgatgtttgtggctttggtctcccagggc
accatgtttttcctcttgcgacttttaatcaatgaatggctaataaagaagctcagactc
ttcttcagaaaatttagttcctcacctgtggcagagacaatagatgaagatgaagatgtg
cgggctgagagactgagggtggagagtggagcagctgagtttgacctggtccagctccat
cgtctcacaaagacctaccaactcatccacaaaaagattattgctgtaaacaacataagc
attgggatacccgctggagagtgctttggccttcttggggtgaacggagcagggaagacc
accatattcaagatgctgactggggacatcattccttccagtggaaacattctgataaga
aataagactggatcactgggtcatgtggattctcacagctcattagttggctactgccct
caggaagatgccttagatgacctggtgactgtggaagaacatctgtatttctatgccagg
gtgcacggaattccagaaaatgatattaaagaaactgttcataaactccttaggagactt
cacttgatgccctacaaggacagagctacctctatgtgcagttatggcacaaaaagaaaa
ttatccaccgcactggccttgataggaaagccttccattctactcctggatgagccgagc
tctgggatggatcctaagtcgaaacggcacctctggaagatcatttcagaagaggtacag
aacaaatgttctgtcatcctcacatctcacagcatggaggaatgtgaagctctctgtacc
aggctggccattatggtaaacgggagattccaatgcataggatctttgcagcacataaaa
agcaggtttggacgtggatttactgtcaaggttcacttgaagaataacaaagtgagcatg
gagaccctcacgaggttcatgcagctccattttccaaaaacgtacttaaaggatcagcac
cttagcatgttagagtatcatgtgccagtcacagcaggtggagtagcaaacattttcgat
ctgctggaaaccaacaaggctgctttaaatatcacgaatttcctagtgagtcagaccact
ctggaagaggttttcatcaactttgccaaagaccaaaagtcctatgtaaatgctgatacc
agtagccaaggttccaccgtaagtttagactcacaggatgaccggatagagtcttag
DBGET
integrated database retrieval system
