Sciurus carolinensis (gray squirrel): 124981899
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Entry
124981899 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncar03041
]
124981899
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124981899
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124981899
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124981899
NCBI-ProteinID:
XP_047403901
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All DBs
Position
4:complement(167386789..167405784)
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AA seq
652 aa
AA seq
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MRGGGFGDRDRDRDRGGFGARGGGGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHP
EVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQC
QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQ
VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRC
TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINV
GNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMR
RDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSS
EDYVHRIGRTARSTNKSTAYTFFXPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGG
GGGKGGRSRYRTTSSANNPNLMYXDECDRRLRGVKDGGRRDSASYRDRGETDRAGYANGS
GYGSPNSAFGAQAGQYTYGQGTYGAAAYGTSGYTAQEYGAGTYGASSTTSTGRSSQSSSQ
QFSGIGRSGQQPQPLMSQQFAQPPGATNMIGYMGQTAYQXPPPPPPPPPSRK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggaggcggctttggggaccgggaccgggaccgggatcgcggaggatttggagca
agaggcggaggtggccttcccccaaagaaatttggtaatcctggggagcgtttacgtaaa
aagaagtgggatttgagtgagctccccaagtttgagaagaatttttacgtggaacatcca
gaagtggcaagactgactccatatgaggtcgatgagctccgccgaaagaaagagattaca
gtgagaggaggagacgtttgtcctaaacctgtctttgccttccatcatgctaacttccca
cagtatgtaatggatgtgttgatggatcagcacttcacagaaccaactccaattcagtgt
cagggatttccattggctctaagtgggcgggatatggtgggcattgctcagactggctct
ggaaagactttggcgtatttgctgcctgcaattgttcatattaaccaccagccatacttg
gaaaggggagatggcccaatttgtctggttctggctcctaccagagagcttgctcagcaa
gtacagcaggtggctgatgactatggcaagtgttctagattgaagagtacttgcatttat
ggaggtgctcctaaaggtcctcagattcgagacttggaaagaggtgttgagatctgcata
gctactcctggacgcctgatagatttcttggagtcaggaaagacaaatcttcgccgatgt
acttaccttgtgctagatgaggctgacagaatgcttgatatgggctttgaaccccagatt
cgtaaaattgtagaccaaatcaggcctgacaggcagacactgatgtggagtgccacctgg
ccaaaagaagtgagacagcttgcagaggatttcctgcgtgattacacccagatcaacgtg
ggcaatctggagttgagtgccaaccacaacatccttcagattgtggatgtctgcatggaa
agtgaaaaagaccacaagttgattcaactgatggaggaaataatggctgaaaaggaaaac
aagacaataatatttgtagagacaaagagacgctgtgatgaccttactcgaaggatgcgc
agagatggttggcctgctatgtgtatccatggagataagagtcaaccagaacgagattgg
gtacttaatgagttccgttctggaaaggctcccatcctcattgccacagatgtagcctcc
cgtgggctagatgtggaagatgtcaagtttgtgatcaactatgactatccaaacagctca
gaggattatgtgcatcgtattggccgaacagcccgtagcaccaacaagagtactgcctat
accttcttcnacccagggaacctgaagcaggccagagagctgatcaaagtgctggaagag
gctaatcaagccatcaatccaaaactgatgcagctggtggaccacagaggaggcggcgga
ggagggggtaagggaggtcgttctcgataccggaccacttcttcagccaacaatcccaat
ctgatgtatncggatgagtgtgaccggaggcttcgaggagttaaagatggtggccggaga
gactctgcaagctatcgggatcgtggtgaaaccgatagagccggttatgctaatggcagt
ggctatggaagtccaaattccgcctttggagcacaagcaggccaatacacatatggtcaa
ggcacctatggggcagctgcttatggcaccagtggctatacagcccaggagtatggtgct
ggcacttatggtgctagtagcaccacctcaactgggagaagttcacagagctctagccag
cagtttagtgggataggccggtctgggcagcagccacagccactgatgtcacaacagttt
gcacagcctccaggagccaccaatatgataggttacatggggcagacggcctaccagnta
ccccctccgcccccgccccctcctccttcacgtaaatga
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