Sciurus carolinensis (gray squirrel): 124981955
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Entry
124981955 CDS
T08117
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
ncar04714
Thermogenesis
ncar05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124981955
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
124981955
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124981955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124981955
03036 Chromosome and associated proteins [BR:
ncar03036
]
124981955
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124981955
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124981955
PBAF complex
124981955
GBAF(ncBAF) complex
124981955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
124981955
NCBI-ProteinID:
XP_047403989
LinkDB
All DBs
Position
4:complement(116523016..116544364)
Genome browser
AA seq
1243 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDEGMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARAEGQATDEKKEPKETREGGVVEEEAKEKTSEIPKKDEEKGKEGDSEKES
EKSDGDPIVDSEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAA
VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPTLPPGSQPIPPSGAAGPPTVHGLAVAP
ASVAPAPAGSGAPPGSLGPSEQIGQAGPTAGPQQPQPTGAPQPGAVPPGVPPPGPHGPSP
FPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAPSIIPFGSLADSISINLP
PPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSP
AIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacg
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtatatacaa
gctgaaccacctactaacaagtccctgtctagtctggtcgtacagttgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctatgccacatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaat
gtagaaatgttcatgaccattgagaagtccttggtacagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacctaaactactggggaaattaaaggacattatc
aagagacaccagggaacagtcactgaagataagaataacgcctcccatgttgtgtatcct
gtcccagggaacctagaagaagaggaatgggtacgaccagtcatgaagagggataagcag
gttcttctgcactggggctactatcctgacagttatgatacatggatcccagctagtgaa
attgaagcatctgtggaagatgccccaactccggagaaacctaggaaggttcatgctaaa
tggatcctagacacagacacctttaatgaatggatgaatgaagaagattatgaagtaaat
gatgacaaaaatcctgtctcccgccgaaagaaaatttcagctaaaacattgacagatgag
gttaatagcccagattcagatcgaagggacaagaagggggggaactataagaagagaaag
cgctccccctctccttcaccaaccccagaagctaagaagaaaaatgctaagaaaggtccc
tcaacaccttacaccaagtcaaagcgtggccacagagaggaggagcaagaagacctgaca
aaggatatggatgagccctctccagtccccaatgtagaagaggtgacactgcccaaaaca
gtcaacactaagaaggactcggagtcagccccagtcaaaggaggcaccatgactgacctg
gatgagcaggaagatgaaggcatggagaccacgggcaaggatgaggatgagagcagtacg
gggaacaagggggagcagaccaagaatccagacctgcatgaggacaatgtgactgagcag
acccatcacatcatcattcctagctatgctgcctggtttgactacaacagtgttcatgcc
attgagcggagggctcttcctgagttctttaatggcaagaataagtccaagactccagag
atctacctggcctatcgaaacttcatgattgacacttatcgactaaaccctcaggaatat
ctcacctctactgcctgccgtcggaacctggcaggtgacgtctgtgccatcatgagggtc
catgccttcctagaacagtggggtcttattaactaccaggtggatgctgagagtcgacca
accccaatggggcctccacccacttctcacttccatgtcttggctgacacgccatcaggg
ctggtacctctgcagcccaagacccctcagggccgccaggttgatgctgataccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagagctctgcttcccaacaaatgctcaactttcctgacaaaggcaaagagaaaccg
acagacatgcagaactttggactgcgcacagacatgtacacaaagaagaatgttccctcc
aagagcaaagctgcagccagtgccactcgggagtggacagaacaggaaaccctgctactc
ctggaggccctggaaatgtacaaggatgactggaacaaagtatccgagcatgtgggaagc
cgcacgcaggacgaatgtatcttgcattttcttcgacttcccattgaagacccgtacctg
gaggactcagaggcctccttgggccccctggcctaccagcctatccccttcagtcagtcg
ggcaaccctgtcatgagcactgttgccttcctggcctctgtcgtcgatccccgagtcgcc
tctgctgctgcaaagtcagctctagaagagttttccaaaatgaaagaagaggtgcccaca
gccttggtggaggcccatgttcggaaagtggaagaggcagccaaagtgacaggcaaggca
gatccagcttttggtctggaaagcagtggaattgcaggaaccacctctgatgagcctgag
cgcattgaggagagcgggactgatgaggcacgggcagagggccaggccacagatgaaaag
aaggagcccaaggaaacccgagaaggaggggttgtagaggaggaagcaaaggagaaaaca
agtgagattcccaagaaggatgaagagaaaggaaaagaaggtgacagtgagaaggagtca
gagaagagtgatggggacccgatagttgattctgagaaggagaaggaaccaaaggaaggg
caggaggaagtattgaaggaagtggtggagtcagagggggaaaggaagacaaaggtggag
cgggacattggtgagggcaacctctccactgcagccgctgctgccctggctgccgctgca
gtgaaagccaagcacttggctgctgttgaggagagaaagatcaaatctttggtggccctg
ctagtggagacccagatgaaaaagttggagatcaaactccggcactttgaggagttggag
acgataatggaccgggagcgggaagcactggagtatcagaggcagcagctcctagccgac
cgacaagccttccacatggagcagctgaagtatgcagagatgagggcacggcagcagcac
ttccaacagatgcaccaacagcagcagcagccaccaccaaccctgcctccaggctcccag
cccatacccccctcaggggctgctgggccacccacagttcatggcctagctgtggctcca
gcctctgtggcccctgctcctgctggcagtggggcccctcctggaagcttgggcccttct
gaacagattgggcaggcaggaccaactgcagggccacagcagccacaaccaactggagct
ccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctcaccg
ttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcgggcac
ccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcctcct
cctgctccatccatcatcccatttggtagtctagctgactccatcagtattaaccttccc
cctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcacactcccc
ccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgaccacc
accatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagccct
gccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagaccca
ggcacccccctgcctccagaccccacagccccaagtccagggacagtcacccctgtgcca
cctccacagtga
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integrated database retrieval system
