Sciurus carolinensis (gray squirrel): 124982092
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Entry
124982092 CDS
T08117
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124982092
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
124982092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_24
CUT
HTH_31
HTH_37
HTH_26
NOC3p
HTH_23
Motif
Other DBs
NCBI-GeneID:
124982092
NCBI-ProteinID:
XP_047404262
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Position
4:complement(9346775..9514186)
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AA seq
444 aa
AA seq
DB search
MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
HSNSDDVDGNDYSEQDTWQVRNGEEEEGRSSEGGREAEKDDSTSHSDHQDPISLAVEMAA
VNHTILALARQGANEIKTEALDDD
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgctcagttcttttccagtggttttgctggaaaccatgtctcactatacagatgaaccc
agatttaccatagaacagatagatctgcttcagcgccttcggcgtactggaatgactaaa
catgaaattctccatgccttggaaactttggaccggcttgatcaagagcatagtgacaag
tttgggagaaggtccagctatggaggaagttcatatgggaacagtaccaacaatgttcca
gcatcttcctctacagctacagcttccacacagacccagcattcgggaatgtccccatca
cctagcaacagttatgatacctccccacagccttgcactactaatcaaaatgggagggag
aataatgagcgattgtctacatccaatgggaagatgtcaccaactcgctatcatgcaaac
agcatgggtcagaggtcatatagttttgaagcgtcagaagaggacctagatgtagatgac
aaagtggaagaattaatgaggagggacagcagtgtgataaaagaggaaatcaaagccttt
cttgccaatcggaggatttcccaagcagttgttgcacaggtaacaggtatcagtcagagc
cggatatctcactggctgttgcagcagggatcagacctgagtgaacagaagaaaagagca
ttttaccgatggtatcaacttgagaagacaaaccctggggctacactgagtatgagacca
gcccccattccaatagaggaccccgaatggagacaaactcctcccccagtctctgccaca
tctgggaccttcagactccgacgagggagtcgatttacctggaggaaggagtgcctggct
gtcatggaaagttacttcaatgagaatcaatacccagatgaagcaaagagagaagaaatt
gcaaatgcttgcaatgccgttatccagaaaccaggcaaaaaactgtccgatctggaacga
gttacctccctgaaagtatataattggtttgctaatagacggaaggagatcaagaggaga
gccaatatcgaagcagcaatcctggagagccatgggatagatgtacagagtccaggaggc
cattccaacagtgatgacgtcgacgggaacgactactccgagcaggatacttggcaagta
cgcaatggggaggaggaggagggaagaagttcagagggaggcagagaagcagagaaggat
gacagcacgagccatagtgaccaccaagaccccatctcattagctgtggaaatggcagca
gtgaaccatactatcttggcattggcccgacaaggagccaacgaaatcaagacagaggcc
ctggatgatgactga
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