Sciurus carolinensis (gray squirrel): 124982123
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Entry
124982123 CDS
T08117
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124982123
03036 Chromosome and associated proteins [BR:
ncar03036
]
124982123
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124982123
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124982123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
124982123
NCBI-ProteinID:
XP_047404331
LinkDB
All DBs
Position
4:168722466..168791359
Genome browser
AA seq
1757 aa
AA seq
DB search
MEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKR
VAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLGGGAGPPPCTAPGAN
PNNAQVTGTLLQSESGTAPESTLGGAAASNYANSTWGPGASSNNGTSPNPIHIWDKVIVD
GSDMEEWPCIASKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNE
CNLGVWKSDSKAKSIQSSNSTTESNNGLGNWRNVSGQDRIGPGSGFSNFNPNSNPSAWPA
LVQEGTSRKGALETDNSNSSAQASTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGP
KNGNTNSLNLSSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGSVGSWGAARGPSG
TDTVSGQSNSGNNGNNGKDREDSWKGASVQKSTGSKNDSWDSNNRSTGGSWNFGPQDSND
NKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNA
QAPCWGRSSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDL
DPRVLSNTGWGQTQIKQDTMWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQS
NQMKSGWGELSASTEWKDPKNAGGWNDYKNNSSNWGGGRPDEKTPSSWNENSSKDQGWGG
GRQPNQGWTSGKNGWGEEVDPAKNSNWESSTSKPVSGWGEGGQNEIGTWGNGGNASLASK
GGWEDCKRSPAWAETGRQPSSWNKQHQPPQQPQQPPPPQPEASGSWGGPPPPPPGSVRPS
NSNWSSGPQPATPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPSSYNYKNVNLWDKNS
QGGPAPREPNLPTPMTGKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDDAGASTSG
WGSTPSNASNTMKPNSKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTTGSQGSASSHN
SASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVDKKFDVD
KRAMNLGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGGNHGLFGNSTAQSRGLHTPV
QPLSSSPSLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQI
PQFQLACQLLLQQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQRQPSMKH
SPSHPVGPKPHLDNMVPNTLNVGLPDLQTKGPIPGYGSGFSSSGMDYGMVGGKEAGTESR
FKQWTSMMEGLPSVATQEANMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDS
WLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIV
DTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIG
HNPTHLSNKMWKNHISRNTTPLPRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRLASAS
TWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEA
AKAQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAATPSAPATGWQSLETGQNQS
DPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPNYSSSLWGVPTVEDPHRMGS
PAPLLPGDLLGGGSDSI
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaagaaagaggataaaaagaaaaaggaagccactcagaaggtc
acggaacaaaaaaccaaagtgcccgaagtgacgaaaccaagtttaagccaaccaacggcc
gccagcccaattggcagctctccatcgccaccagtcaatggtggcaacaatgccaaaagg
gtggcagtgccgaacggacaaccgccaagcgccgcccgctacatgcctcgggaggtgccg
ccgcgattccgttgccagcaggaccacaaagtgttactaaaacgtgggcagccccctcca
ccgtcctgcatgctcgggggtggggcagggcctcctccctgcacagcacctggagcaaac
ccaaacaacgcacaagtgacaggcacgctgctgcagagcgagagtgggactgcgccagag
tcaacccttggaggtgctgctgcttcaaattatgcaaattccacttggggcccgggagcc
tcctccaacaacggcacctcccccaacccaattcacatctgggacaaggtgattgtagac
gggtctgacatggaagagtggccttgtattgccagcaaagacactgaatcttcttccgaa
aacaccaccgataacaacagtgcctcgaaccctggctctgagaagagcactctgccagga
agcaccactagtaacaaaggcaaagggagccagtgccagtctgcaagttctgggaacgaa
tgtaatcttggggtctggaaatctgactctaaggctaaatctattcaatcttccaactct
accacagagagcaacaatggacttggaaattggaggaatgtgagtggtcaggatagaatt
ggacctggctctggcttcagcaactttaacccaaatagcaacccatctgcctggccagcg
ctggtccaagaaggaacttctaggaaaggggcattggaaacggataatagtaattccagt
gcacaggctagcacagtaggtcaggcatccagggaacagcagtcaaagatggaaaatgcg
ggtgttaatttcgttgtctctggcagagaacaggctcaaattcataacactgatggacca
aaaaatggaaacactaactccttgaacttaagttcaccaaaccccatggagaataaggga
atgccctttggaatgggcttggggaacacctccaggagcactgatgccccttcacaaagc
actggagatcgaaaaactgggagtgttggatcttggggtgcagctagggggccttctgga
actgacacagtctctggacaaagcaattctggaaacaatgggaacaatggaaaagacaga
gaggactcctggaaaggagcttctgttcagaaatcaactgggtcaaaaaatgactcttgg
gacagtaataacaggtctacgggtgggtcctggaactttggccctcaggactctaatgac
aacaaatggggtgaagggaacaaaatgacatctggggtctctcagggagaatggaaacag
ccgactgggtctgatgagttgaaaattggagaatggagtggtccaaaccaaccaaattct
agcactggagcatgggacaatcaaaagggccaccccctccctgaaaaccaaggcaatgcc
caggctccctgttggggaagatcttccagctccacaggaagtgaagttggaggtcaaagc
actggaagcaaccacaaagcaggaagtagtgacagtcataattctggccgtcggtcctac
aggcccacacatcctgattgccaggctgtcttgcagactcttttgagccgaactgatttg
gatcccagggtgctgtcaaacactggctggggccaaactcaaattaagcaggacacgatg
tgggatattgaagaggtgccaaggcctgaggggaaatctgacaaaggaactgaggggtgg
gagagcgctgccacacagaccaagaactcagggggctggggagatgcacccagccaaagc
aatcaaatgaagtctggatggggggagctctcagcctctacggagtggaaagaccccaag
aatgcaggaggctggaatgactataagaacaactcttccaactggggaggaggacgacca
gacgaaaagacaccttcctcctggaatgagaattccagcaaggatcaggggtgggggggt
ggacgtcagcccaatcaaggatggacttctgggaagaatggttggggagaggaagttgat
ccagcaaaaaacagcaactgggaaagttctacaagtaaacctgtgtctgggtggggggaa
ggagggcagaacgaaattggaacttggggaaatggtgggaatgcaagcctagcttcaaaa
ggtgggtgggaagattgcaaaaggtcccctgcatgggctgagacaggcaggcagcccagt
tcctggaataaacagcaccaaccaccacagcagccacagcagccaccgccaccacaacca
gaggcttctggttcgtggggaggcccacccccaccacctccaggcagtgttcgaccttcc
aattccaactggagcagcggaccccagcctgcaacccccaaggatgaggaaccgagcggt
tgggaagagccatccccacagtcaattagtcggaaaatggacatcgatgatggcacttca
gcatggggagaccctagcagttacaactacaagaatgtgaacctatgggataagaattcc
caagggggcccagcacctcgagaaccgaacctgcccaccccaatgactggaaaatcagca
tccgtctggagtaaaagcacaccacctgctccagataacgggacttcagcttggggtgaa
ccaaatgaaagcagtcctgggtggggagagatggacgatgcaggagcatcgacttcgggc
tgggggagcacaccctccaacgcttccaacaccatgaaacccaattccaaatctatgcaa
gatggctggggggagagtgatgggccagtcacaggaactcggcatcccagctgggaagag
gaggatgatggaggagtctggaacaccaccggctctcagggaagtgcttcctcccacaac
tcggcaagctggggacaaggaggaaagaaacaaatgaagtgctcactaaaaggaggaaac
aatgattcatggatgaatcctcttgccaaacagttttcaaatatgggattgctgagtcaa
actgaagataatccaagcagcaaaatggatttgtctgtagataagaaatttgacgtggac
aagcgagcaatgaatctcggggattttaatgatatcatgaggaaggatcgatctgggttc
cgtccacctaattccaaagacatgggaaccacagatagtgggccttattttgagaagggt
ggcaatcacggtttgtttggaaacagcacagcacaatcgagaggtctgcacacaccagtg
cagccgctaagttcttctcctagtctccgggcgcaagtgcctccccagtttatctccccc
caggtttctgcctcaatgctcaagcagtttcccaacagtggcctgaatccaggtcttttc
aatgtggggccccagttatctcctcaacaaattgccatgctgagccagcttccacaaatc
ccccagtttcagttggcatgtcagcttctcctgcagcagcagcaacagcagcagttactg
cagaaccagagaaagatttctcaagcagtgcgccagcagcaagagcagcagctggctcga
atggtgagtgcacttcagcagcagcagcagcaacagcagcggcagccgagcatgaagcat
tcgccctctcatcctgttgggcccaagccacatctggacaacatggtacccaacacactg
aatgtggggctcccagatcttcagaccaaagggccgatccctggatatggttctggcttc
agctctagtggcatggactatggcatggttggtgggaaggaggctgggactgagtctcgc
ttcaaacagtggacctccatgatggaaggactgccctctgtagccacacaggaagccaat
atgcacaaaaatggcgctatagtggcccctggtaaaacccgaggagggtcaccgtacaac
cagtttgatatcatcccgggtgacacactgggtggccatacaggtcctgctggtgatagc
tggttacctgccaaatctccaccaacaaataaaattggaagtaaatccagcaatgccagt
tggcctccagaattccaaccaggagtgccatggaaaggtatccaaaacattgaccctgaa
tctgacccctatgtcaccccaggaagtgtgctggggggtacagccacatctcccattgta
gatactgaccaccaactgctgcgggataacaccacagggtctaattcttccctcaacacc
tcgctgccttcacctggtgcctggccctacagtgcctctgacaactcctttaccaacgtt
catagcacttcagcaaagttccctgattataaatccacgtggtccccagatcccatagga
cacaaccccactcatctctccaacaagatgtggaaaaaccacatctccaggaacactaca
ccgctgccccgcccacctcccggcctgaccaaccccaaaccggcatctccctggagcagc
acagcaccccgatcagtcagggggtgggggacacaggactctcggcttgcctcagcctct
acctggagcgatggtggctcagttcgccctagttactggctggttcttcacaatctcact
ccacagattgatgggtcaaccttgagaacgatttgcatgcagcatggtccactgctgaca
ttccatctgaatctaacccagggcactgccctgatccgatacagcaccaaacaggaggcg
gccaaggcccaaactgcactgcacatgtgtgtgttgggaaacactaccatcctggctgag
tttgccactgatgatgaagttagccgctttctggcacaagctcagccacctacgcctgca
gcaaccccaagtgcaccagccacggggtggcagtcgctggagacgggccagaaccagtca
gaccctgtaggacctgcgctgaaccttttcggtgggtccactgggctcgggcaatggagc
agcagtgctggtggcagcagcggggctgatcttgctggcgcttcattgtggggaccccca
aactattcttctagcttgtggggagtcccaactgtggaagatccccataggatgggcagc
cctgctcctttactacctggtgaccttctgggaggagggtcggattcaatctga
DBGET
integrated database retrieval system
