Sciurus carolinensis (gray squirrel): 124982508
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Entry
124982508 CDS
T08117
Name
(RefSeq) AT-rich interactive domain-containing protein 2
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
ncar05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124982508
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124982508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124982508
03021 Transcription machinery [BR:
ncar03021
]
124982508
03036 Chromosome and associated proteins [BR:
ncar03036
]
124982508
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
ARID
124982508
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124982508
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
124982508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
124982508
NCBI-ProteinID:
XP_047405221
LinkDB
All DBs
Position
4:106479267..106651916
Genome browser
AA seq
1836 aa
AA seq
DB search
MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGF
AKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKP
QLPIGAIPSSYNYQQHSVSDYLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVC
TLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDI
VDDNEVRDLISDRNKSHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAVILRNLSFEE
GNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVT
KCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLE
VLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLVEHPSSSHQVLSE
IRPQAIEQVQTQTHVASSPASRAVVAQHVAPPPGIVEIDSEKFACQWLNAHFEVNPDCSV
SRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDSSNNGQAHIHVVGVK
RRAIPLPIQMYYQQQPVSTPVVRVDSVPDVSPTPSPAGIPHGSQTVGNHFQRTPVTNQSS
NLTATQMSFPVQGVHTVAQTVPRIPPNPSLHTHQQQNAPVTVIQNKAPIPCEVVKATVIQ
NSVPQTAVPVSIAVGGGPTQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQPSPLHTVVP
GQIPSGTPVTVIQQAVPQSHIFGRVQNIPACTSTVSQGQQLITTSPQPVQASSQQTSAGS
QPQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQMVTIAGVPSPQPSRVGFQNIAPKP
LPSHQVSSTVVQQPIQQPQQPTQQSVVIVSQPAQQGQTYAPAIHQIVLANPAALPAGQTV
QLTGQPNITPSSSPSPVPATNNQVPTAMPSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPA
PPPQQVQVQVQQPQQVQMQVQPQQTNAGVGQPASGESSLIKQLLLPKRGPSTPGGKLILP
APQIPPPNNARAPSPQVVYQVANNQAAGFGVQGQTPTQQLLVGQQNVQLVQSAMPPTGGV
QTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFATATVSQGNATQLIAPAG
ITMSGTQAGVGLQVQTLPATQASPAGQSSCTTATPPFKGDKIICQKEEEAKEATGLHVHE
RKIEVMENPSCRRGATNTSNGDSKENEMQVGSLLNGRKYSDSSLPPSNSGKIQSEVNQCS
LISNGPSLELGENGASGKQNSEQMDIQDIKSDLKKTLVNGICDFDKGDGSHLSKNIPNHK
TSNHVGNGEISPVEPQGTLDATQQDTAKGDQLERISNGPVLTLGGSPSMSSIQEASNATI
QQFSGTDLPNGPLASSLNSDVPQQRPSVVVSPHSTTSVIQGHQIIAVPHSGSRVSHSPVL
SSDVRSTNGTAECKTVKRPAEDNDRETVAGIPNKVGVRIVTISDPNNAGCSATMVAVPAG
ADPSTVAKVAIESAVQQKQQHPPTYIQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSASS
QHADPMRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQR
FSFITHLQDKHCSKDALLAGLKQDEPGQAGSQKSSTKQPAVGGTSSTPRAQKAIVNHPSA
ALMALRRGSRNLVFRDFTDEKEGPITKHIRLTAALILKNIGKYSECGRRLLKRHENNLSV
LAISNMEASSTLAKCLYELNFTVQSKEQEKDSEMLQ
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggcaaactcgacggggaaggcgcctccggacgagcggagaaagggactcgctttcctg
gacgagctgcggcagttccaccacagcagagggtcgccttttaaaaaaatccctgcggtg
ggtgggaaggagctggatcttcacggtctctacaccagagtcactactttaggcggattc
gcgaaggtttctgagaagaatcagtggggagaaattgttgaagagttcaactttcccaga
agttgttctaacgctgcctttgctttaaaacagtattacttgcgttatttagaaaagtac
gagaaagttcatcattttggggaggatgatgatgaggtaccaccaggcaatccaaagcca
cagcttcctattggtgcaattccatcttcctacaattaccagcaacacagtgtgtcagat
tatctgcggcaaagttatgggctatctatggattttaattcgccaaatgattataataaa
ttggtgctttcactgttatctggactcccaaatgaagtggactttgctattaatgtatgc
actctcctatcaaatgaaagcaagcacgtcatgcaacttgaaaaagaccctaaaatcatc
acattattacttgctaatgctggggtgtttgatgacactttaggatccttttctactgta
tttggagaagaatggaaagagaagactgatagagactttgttaagttttggaaagacatt
gttgatgataatgaagtacgggatctcatatctgatagaaacaagtctcatgaaggtaca
tcaggagaatggatttgggaatctttatttcatccacctcgaaagctgggcattaatgat
attgaaggacagcgggtacttcagattgcagtgattttgagaaatctttcctttgaggag
ggcaatgttaagctcttggcagctaatcgtacctgtcttcgtttcctgttactttctgca
catagtcattttatttctttaaggcaattaggccttgatacattaggaaatattgcagct
gagcttttgttggaccctgttgatttcaaaactactcatctaatgtttcataccgttaca
aaatgcttaatgtcgagggatagatttttaaagatgaggggcatggaaattttgggaaat
ctttgcaaagcagaagataatggtgttttaatttgtgaatatgtggatcaagattcatat
agagagatcatttgtcatctcactttacctgatgtgctgctcgtaatctcaacacttgag
gtgctatacatgctcactgaaatgggagatgttgcttgcacaaaaattgcaaaagtagaa
aagagcatagacatgttagtttgtctggtttctatggatattcagatgtttggccctgat
gcactagcagcagtaaaactcgtcgaacatccaagttccagtcatcaagttttatcagaa
attaggccacaagctatagagcaagtccaaacccagacccatgtagcctcttccccagct
tccagagcagttgtagcacagcatgttgctccacctccaggaatagtggaaatagatagt
gagaagtttgcttgtcagtggctaaatgctcattttgaagtaaatccagattgttctgtc
tctcgagcagaaatgtattctgaatacctctcaacttgtagtaaattagctcgtggtgga
atcctcacatcaactggattttataaatgtcttagaacagtttttccaaatcatacagtg
aagagagtggaggattccagtaacaatgggcaggcacatatccatgtggtaggagtaaaa
cggagggctatcccacttcccattcagatgtactatcagcagcaaccagtgtctactcct
gttgttcgtgttgattctgttcctgatgtatctccaactccttcacctgcaggaatccct
catggatcacaaactgtaggaaatcattttcagaggactcctgttaccaaccaatcttca
aatttgactgcaacacaaatgtcatttccagtacaaggtgttcatactgtggcacagact
gttccaagaattccaccaaatccttcacttcatacccaccagcagcaaaatgctccagtg
actgtcattcaaaataaagctccaataccttgtgaagtggttaaggctacagtaatccag
aattctgtaccccagacggcagttcctgttagtattgctgttggaggaggacctacacag
agttctgtggttcagaatcacagtacagggccacaacctgttacagttgtgaattctcag
acattgcttcaccatccatctgtaattccacagccgtctccattacacacggtggtacca
ggacaaataccgtcaggcactcctgttacggtaattcaacaagcagtcccacagagtcat
atatttggcagagtacaaaacataccagcatgtacttctacagtttcacagggtcaacag
ttaattaccacatcaccccaacctgtgcaagcttcatctcaacagacatcagctggtagc
cagccacaggacactgttatcatagcacccccacagtatgtaacaacttctgcatccaac
attgtctcagcaacttcagtacagaattttcaggtagctacaggacaaatggttaccatt
gctggtgtcccaagtccacaaccctcaagggtagggtttcagaacattgcaccaaaacct
ctcccttctcaccaagtttcatcaacagtggtacagcagcctattcaacaaccacagcag
ccaacacaacaaagtgtagtgattgtaagccagccagctcaacaaggtcaaacttatgca
ccagccattcaccaaattgttcttgctaatccagcagctcttccagctggtcagacagtt
cagctaactggacagccaaacataactccatcttcttcaccatcacctgtcccagctacc
aataaccaagtccctactgccatgccatcttcttccacccctcaatcacagggaccacct
cctactgtcagtcaaatgctatctgtgaaaaggcagcaacagcagcagcattcaccagca
cccccaccacaacaggtacaggtacaagttcagcagccacaacaagtacagatgcaagtt
cagcctcagcaaacaaatgcaggagttggtcagcctgcttctggtgagtcaagtctgata
aaacagctgctacttccaaagcgtggtccttcaactccaggtggtaaacttattctccca
gctccacagattcctccccctaataatgcaagagctcctagccctcaggtggtctatcag
gtggccaataatcaagcagctggttttggagttcaggggcaaactccaactcagcagctg
ttggttgggcaacaaaatgttcagttggtccaaagtgcaatgccacccacagggggagtg
caaactgtgcccatctcaaacttacaaatattgccaggaccactgatctcaaatagccca
gcaaccattttccaaggaacttctggcaaccaggtaaccataacagttgtgccaaataca
agttttgcaactgcaactgtgagtcagggaaatgcaactcagctcattgctccagcggga
attaccatgagcggaacacaggcaggagttggacttcaggtacaaacacttccagccact
caagcatctccagctggacaatcatcatgtactactgctactcccccgttcaaaggtgat
aaaataatttgccaaaaggaggaggaagcaaaggaagcaacaggtttacatgttcatgaa
cgtaaaattgaagtcatggaaaacccatcgtgccgacgaggagccacaaacaccagcaat
ggggattcaaaagaaaatgaaatgcaggtgggaagtcttttaaatgggagaaagtacagt
gactcaagtctacctccttcaaactcagggaaaattcaaagtgaggtcaatcagtgctca
ctaatcagtaatggaccatcattagaattaggtgagaatggagcatctggaaaacagaac
tcagaacaaatggacatacaggatatcaaaagtgatttgaaaaaaaccctagtaaatgga
atctgtgattttgataaaggagatggttctcatttaagcaaaaacattccaaatcacaaa
acttccaatcatgtaggaaatggtgagatatctccagtggaaccacaaggaactttagat
gccactcagcaagatactgccaaaggtgatcagctagaaagaatttctaatggacctgta
ttaactttgggtggttcaccatctatgagcagtatacaggaggcttcaaatgcgacaata
cagcaatttagtggtactgatttgcctaatggacctctagcttcaagtttgaattcagat
gtgcctcagcaacgcccaagtgtagttgtctcaccacattctacaacctctgtcatacag
gggcatcaaatcatagcagttccccactcaggatcaagagtgtcccattctcctgtccta
tcatcagatgttcggtctacaaatggcacagcagaatgcaaaactgtaaagaggccagca
gaggataatgatagggaaacagtcgcaggaattccaaataaagtaggagttagaattgtt
acaatcagtgaccccaacaatgctggctgcagtgcaacaatggttgctgttcctgcagga
gcagacccaagcactgtagctaaagtagcaatagaaagtgctgttcagcaaaagcagcag
catccaccaacatatatacagaatgtggtcccacagaacactcctatgccaccttcacca
gctgtacaagtgcagggccagcctaacagttctcagccttctccattcagtgcatccagt
caacatgcagatccaatgagaaaacctgggcagaacttcatgtgtctgtggcagtcttgt
aaaaagtggtttcagacaccctcacaggtattctaccatgcagctacggaacatggaggc
aaagatgtatatccgggacagtgtctttgggaaggttgtgagccttttcagcgacagagg
ttttcttttataacccacttacaggataagcactgttcaaaggatgccctacttgcagga
ttaaaacaagatgagccaggacaagcaggaagtcaaaaatcttctactaagcaaccagct
gtagggggcacaagttcaactcctagagcacaaaaggccattgtgaatcatcccagtgct
gcactcatggctctcaggagaggatcaagaaaccttgtctttcgagattttacagatgaa
aaagagggaccaataactaaacacatccgactaacagctgccttaatattaaaaaatatt
ggtaaatactcagaatgtggtcgcaggttgttaaagagacatgaaaacaacttatcagtg
ctagccattagtaacatggaagcttcctccacccttgccaaatgcctttatgaacttaat
tttacagttcagagtaaagaacaagaaaaagactcagaaatgctgcagtga
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