Sciurus carolinensis (gray squirrel): 124982510
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Entry
124982510 CDS
T08117
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
ncar04714
Thermogenesis
ncar05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124982510
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
124982510
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124982510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124982510
03021 Transcription machinery [BR:
ncar03021
]
124982510
03036 Chromosome and associated proteins [BR:
ncar03036
]
124982510
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
ARID
124982510
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124982510
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124982510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
124982510
NCBI-ProteinID:
XP_047405227
LinkDB
All DBs
Position
1:complement(190228425..190307411)
Genome browser
AA seq
2307 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAERGEMKAAAGQESEGPAVG
PPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGG
GGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAAL
QSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGSGA
AAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSS
ARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP
GSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGS
QTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPP
YSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPSQQSTTQQH
PQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELS
QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTS
GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQM
PPRPPSGQSDSIIHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQMHTG
MGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQMHGQ
PGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQESAVAMHVA
ANSIQNRPPGYPNMSQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAAS
PEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWV
DRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGT
SSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGP
QTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQKRNS
MTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAA
GPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSTPDSGMYSPSRY
PPQQQQQQQRSVKPGLGATVTQALPFSSLIFCFSPSCRHDSYGNQFSTQGTPSGSPFPSQ
QTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQSQSASQQQ
AAQPSPQQDVYNQYGNAYPATATAATERRPTGGPQNQFPFQFGRDRVSAPPGSNAQQNMP
PQMMGGPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQ
RPNHEGPWPSHGTRQPPYGPSAPVPAMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMEN
RTSPSKSPFLHSGMKMQKAGPPVPASHIAPAAVQPPMIRRDITFPPGSVEATQPVLKQRR
RLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLV
EYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFSKVSSPAPTEGEDEEELLGPRLEEEEE
EEAIENDEEMAFLGKDKPASENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFD
SGLLHWRIGGGDTTEHIQTHFESKTELLPSRPHVPCPTAPRKHVITIEGVPGTTEQEGPP
PDGPPEKRITATMDDMLSTRSSTLTEEGAKSAEATKESSKFPFGISPAQSHRNIKILEDE
PHSKDETPLCTLLDWQDSLAKRCICVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLH
HKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPE
SICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILAT
PPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGF
LEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRL
LDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6924 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagccgagcagcagcagcgggaggaggcggggggcgaggcggcagcg
gccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgccgtgggg
ccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggtggcggc
ggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaactcgaac
gggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggcggcggc
ggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgccttgccg
cccccagcctacggcttcgggcaaccctacggccggagtccgtctgccgtcgccgcggcg
gcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcgctg
cagagcggcggcggcggcgggggcctggagccctacgcggggccccagcagaactcgcac
gaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctacccc
ccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggctccggcgcg
gcggccgccggctccaagccgcctccctcctccagcgcctccgcctcctcgtcgtcttcg
tccttcgctcagcagcgcttcggggccatggggggaggcggcccctcagcggccggcggg
ggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagctcg
gcccggggctaccagggctaccctgggggcgactacggcggcgggccccaggacgggggc
gcgggcaagggcccggcggacatggcctcgcagtgctggggggctgctgctgctgctgcg
gcggcggccgccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagcccc
gggagcagcggcggcggggggcagccgctcgcccggacccctcagccatccagtccaatg
gatcagatgggcaagatgagacctcagccatatggcgggactaacccatactcgcaacaa
cagggacctccgtcaggaccgcagcaaggacatgggtacccagggcagccatatgggtcc
cagactccacagcggtacccgatgaccatgcagggccgggcgcagagtgccatgggcagc
ctctcttatgcacagcagattcctccttatggacaacaaggccccagtgggtatggtcag
cagggccagactccatattacaaccagcaaagtcctcaccctcagcagcagcagccaccc
tactcccagcaaccaccatcccagacccctcatgctcaaccttcatatcagcagcagcca
cagtctcagccaccgcagctccagtcctctcagcctccatattcccagcagccatcccag
cctccacatcagcaatccccaactccatatccctcccagcagtccacgactcagcagcac
ccccagagccaacccccctactcgcagccacaggcacagtctccctaccagcagcaacaa
cctcagcagccagcatcctcgacgctctcccagcaggctgcatatcctcagccccagtct
cagcagtcccagcaaactgcctactcccagcagcgcttccctccaccacaggagctttct
caagattcttttgggtctcaggcatcctcagccccctcaatgacctccagtaaaggaggg
caagaagatatgaacctgagccttcagtcaagaccctccagcttgcctgatctctctggt
tcaatagacgatctccctatggggacagaaggagctctgagtcctggagtgagcacatca
gggatttccagcagccaaggagagcagagtaatccagctcagtctcctttctctcctcat
acctcccctcacctacctggcatccgaggcccttccccatcccctgttggctctcccgcc
agtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggcaaccagatg
ccacctcggccacccagtggccagtcagacagcatcatacatccttccatgaaccaatca
agcattgcccaagatcgaggttatatgcagaggaacccccagatgccccaatacagttcc
ccacagcccggctcggccttatctccacgtcagccttctggaggacagatgcacacaggc
atgggttcctaccagcaaaattccatggggagctatggtccccaagggggtcagtatggc
ccacaaggaggctaccccaggcagccaaactacaatgccttgcccaatgccaactatccc
agtgcaggcatggctggaagcatgaaccccatgggtgctggaggtcagatgcatgggcaa
cctggcatcccaccttatggcacacttcctccagggagaatgagtcatgcctccatgggc
aacaggccttatggtccaaacatggccaatatgccacctcaggttgggtcagggatgtgt
cctccaccagggggaatgaaccggaaaactcaagaatctgctgtcgccatgcatgttgct
gccaactctatccaaaacaggccaccaggctaccctaatatgagtcaggggggcatgatg
ggaactggacctccctatggacaagggattaacagtatggctggcatgatcaaccctcag
ggacccccatatcccatgggtggaaccatggccaacaattcagcagggatggcagccagc
ccagagatgatgggtcttggggacgtcaagttaactccagctaccaaaatgaacaacaag
gcagatgggacacctaagacagaatctaaatccaagaaatccagttcttctactacaact
aatgagaagatcaccaagttgtatgagcttggtggtgagcctgagaggaagatgtgggtg
gaccgttatctggccttcacggaggagaaggccatgggcatgacaaatctgcctgctgtg
ggtaggaaacctctggacctctatcgcctctatgtgtctgtgaaggagattggtggtttg
actcaggtcaacaagaacaaaaaatggcgggaacttgcaaccaacctcaatgtgggcacg
tcaagcagtgctgccagctccttgaaaaagcagtatatccagtgtctctacgcctttgaa
tgcaagattgagcggggagaagaccctcccccagacatctttgcagctgctgattccaag
aagtcccagcccaagatccaacccccctctcctgcgggatcagggtctatgcagggacca
cagactcctcagtcaaccagcagttccatggcagaaggaggagacctgaagccaccaact
ccagcatccacaccacacagtcagatcccccccttgccaggcatgagcaggagcaattca
gttgggatccaggatgcctttcctgatggaagtgaccccacattccagaagcggaattcc
atgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatggggcgcatg
tcctatgagccaaataaggatccttatggcagcatgaggaaagctccagggagtgatccc
ttcatgtcctcagggcagggccccaacggcggcatgggtgatccatatagccgagctgca
ggccctgggcttggaaatgtggctatgggaccacgacagcactacccctatggaggtcct
tatgacagagtgaggacggagcctggaatagggcccgagggaaacatgggcactggggcc
ccccagcccaatctcatgccttctaccccagactcggggatgtattctcccagccgctac
cccccgcagcagcagcagcagcagcaacggtcagtgaagcctggtctcggtgccactgtt
actcaggctttgccattctccagcctaatcttctgtttctctccctcctgtagacatgat
tcctatggcaatcagttctccacccaaggcaccccttctggtagcccctttcccagccag
cagaccacaatgtatcagcagcaacagcagaattataagcggccaatggatggcacatac
ggccctcctgccaagcggcatgaaggagagatgtacagtgtgccatacagcactgggcag
gggcagcctcagcagcaacagttgccccctgcccagtctcagtctgccagccagcaacaa
gctgcccagccttcccctcagcaagacgtgtacaaccagtatggcaatgcctatcctgct
actgccactgctgctactgagcgccgaccaacaggcggcccccagaaccaatttccattc
cagtttggccgagaccgagtctctgcaccccctggctccaatgcccagcagaacatgcca
ccacaaatgatgggcggccccatacaggcatcagctgaagttgctcagcaaggcaccatg
tggcaggggcgtaatgacatgacctataattatgccaacaggcagagcacgggttctgcc
ccccagggtcctgcatatcatggtgtgaaccgaacagatgaaatgctgcacacggatcag
aggcccaaccatgaaggcccatggccttcccatggcacacgccagcctccatatggtccc
tctgcccctgtgcccgccatgacaaggccccctccatctaactaccagcccccaccaagc
atgcagaatcacattcctcaggtatctagccccgctcccctgccccggccaatggagaac
cgtacctctcctagcaagtctccattcctgcactctgggatgaaaatgcagaaggcaggc
cctccagtacctgcctcgcacatagcacctgccgccgtgcagccccccatgattcggcgg
gatatcaccttcccacctggctctgttgaagccacacagcctgtgttgaagcagagaagg
cggctcacaatgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaag
tctgggctcctggcagagagcacgtgggcattagacaccattaacatcctgctatatgat
gacaacagcattatgaccttcaacctcagtcagctcccagggttgctggagctccttgtg
gaatacttccgacgatgcctgattgagatctttggcattttaaaggagtatgaggtgggt
gacccaggacagagaacacttctggaccctgggagattcagcaaggtgtctagtccagcc
cccacggagggggaggatgaagaagaacttctaggtcctagattagaggaggaggaggaa
gaagaggcaattgaaaatgatgaggagatggcctttttgggcaaggacaagccagcttca
gagaatagtgaggagaagttaatcagtaagtttgacaaacttccagtaaagatcgtacag
aagaatgacccatttgtggtggactgctcagataagcttgggcgtgtgcaggagtttgac
agtggcctactgcactggcggattggtggtggggacaccactgagcatatccagacccac
tttgagagcaagacagagctgctgccttcccggcctcatgtgccctgtccaacagccccc
cggaaacatgtcataacaatagagggtgtgcccgggacaacagaacaagagggacctcca
cctgatggccctccagaaaaacggatcacagccactatggatgacatgttgtctacccga
tctagcacattgaccgaggagggagctaaaagtgcagaagccaccaaggaaagcagcaag
tttccatttggcattagcccagcacagagccaccggaacatcaagatcctagaggatgaa
ccccacagtaaggatgagaccccactgtgtacccttctggattggcaggattcccttgcc
aagcgctgcatctgtgtttccaataccatccgaagcctgtcatttgtgccaggcaatgat
ttcgagatgtctaaacaccctgggctgttgcttatcctgggcaagctgatcctgctgcac
cacaagcacccagaacgaaagcaggcaccactaacttatgagaaggaggaggaacaggac
caaggggtgagctgcaacaaagtggagtggtggtgggactgcttggagatgctccgggaa
aacaccttggtcacgctcgccaacatctcggggcagttggacctctccccataccccgag
agcatttgcctgcctgtcctggacggactcctacactgggcagtttgcccttcagctgaa
gcccaagaccctttctccaccctgggccccaatgccgtcctctctccccagagattggtc
ttggaaaccctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccaca
ccccccttcagccgcctggaaaagttgtatagtaccatggtgcgcttcctcagtgaccga
aagaacccggtgtgccgggagatggccgtggtactgctggccaacctggcgcagggggac
agcctggcagcccgtgccatcgcagtgcagaagggcagcattggcaacctcctgggcttc
cttgaggacagtcttgctgccacacagttccagcagagccaggccagcctcctccacatg
cagaacccaccctttgagccaactagtgtggacatgatgcggcgggctgcccgtgcgctg
cttgccctggccaaggtggatgagaaccactcggagttcactctgtatgagtcgcggctg
ttggacatctcagtgtcaccattgatgaactcattggtttcacaagtcatttgtgatgta
ctgtttttgattggccagtcatga
DBGET
integrated database retrieval system
