Sciurus carolinensis (gray squirrel): 124982608
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Entry
124982608 CDS
T08117
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124982608
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124982608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124982608
NCBI-ProteinID:
XP_047405480
EnsemblRapid:
ENSSCRG00010004045
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All DBs
Position
4:complement(89816388..90759750)
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AA seq
764 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPN
KPHSEEFQPVSLLTQETCGHRTPTTQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQS
GESLSSATLGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFL
LPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPG
IPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPA
LRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDG
KVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSE
SRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN
LEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQY
FNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEE
PHIKEEIQAEDINGEIYDEYDEDEDDPDVDYGSDSENHIAGQAN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggaa
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaac
aagcctcactctgaggaatttcagccagtttctctgctgacgcaagagacttgtggccat
aggactcccactactcagcacaatacaatggaagttgatggcaataaagttatgtcttca
ttcgctccacacaactcatctacctcacctcagaaggcagaagaaggtgggcgacagagt
ggcgagtccttgtctagtgcaaccctggggactcctgaaaggcgcaagggcagcttggct
gatgttgttgacaccttgaagcagaggaaaatggaggagcttatcaaaaacgagccagaa
gaaacccccagtattgaaaaactactctcaaaggactggaaagacaagcttcttgcaatg
ggatcagggaactttggcgaaataaaagggactccagaaagcctagctgagaaagagagg
cagctgatgggtatgatcaatcagctgacaagtctgcgagagcagctattggctgcccat
gatgagcagaagaaactggctgcatctcagattgagaaacagcgccagcaaatggagctg
gctaagcagcaacaagagcagattgcaagacaacagcagcagctcctgcagcaacaacac
aaaatcaatttgcttcagcaacagatccagcaggttcaaggtcagctgccgccattaatg
atccccgtattccctcctgatcaacggacactggctgcagctgcccaacaaggattcctc
ctccctccaggcttcagctataaggctggatgtagtgacccttaccctgttcagctgatc
ccaactaccatggcagctgctgccgcagcaacaccaggcttaggcccactccaactgcag
cagttatatgctgcccagctagctgcaatgcaggtgtctccaggaggaaagctcccaggc
ataccccaaggcaaccttggtgctgctgtatctcctaccagcatccatacagacaagagc
acaaacagcccaccacccaaaagcaaggatgaagtggcacagccactgaacctatcagct
aaacccaagacctctgatggcaaatcacccacatcacccacctctccccatatgccagct
ctgagaataaacagtggggcaggccccctcaaagcctctgtcccagcagcattagctagt
ccttcagccagagttagcacaataggttatttaaatgaccatgatgctgtcaccaaggcc
atccaagaagcgcggcagatgaaggagcaacttcggcgggaacaacaggtgcttgatggg
aaggtggctgttgtgaatagtctaggtctcaataactgccggacagaaaaggaaaaaaca
acactggaaagtctgactcagcaactggcagttaaacagaatgaagaaggaaaatttagc
catgcaatgatggacttcaacatgagtggagattctgatggaagtgctggagtttcagag
tcaagaatttacagggaatccagggggcgtggtagcaatgaaccccacataaagcgtcca
atgaatgcctttatggtgtgggctaaagatgagcggagaaaaatccttcaagcctttcct
gacatgcacaactccaacatcagcaagatactgggatctcgctggaaagctatgacaaac
ctagagaaacagccatattacgaggagcaagcccgtctcagcaagcagcacctggagaag
taccctgactacaagtacaagcccaggccgaagcgcacctgcctggtggatggcaagaag
ctgcgcattggagaatacaaggcgatcatgaggaacaggcgacaggaaatgcggcaatac
ttcaatgttgggcaacaagcacagatccctattgccaccgcgggtgttgtgtaccctgga
gccatcgccatggctgggatgccctctcctcacctgccctcggagcactcgagtgtgtcc
agcagcccagagcctgggatgcctgttatccagagcacttacggtgtgaaaggagaggag
ccacatatcaaagaagagatacaggctgaggacatcaatggagaaatttatgatgagtac
gatgaggatgaggatgatccagatgtagattatgggagtgacagtgaaaaccatattgca
ggacaagccaactga
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