Sciurus carolinensis (gray squirrel): 124982692
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Entry
124982692 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor, proline- and glutamine-rich-like
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ncar01009
]
124982692
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124982692
03041 Spliceosome [BR:
ncar03041
]
124982692
Protein phosphatases and associated proteins [BR:
ncar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124982692
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124982692
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124982692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
HERV-K_REC
RRM_7
Motif
Other DBs
NCBI-GeneID:
124982692
NCBI-ProteinID:
XP_047405618
LinkDB
All DBs
Position
4:<47288694..47294124
Genome browser
AA seq
726 aa
AA seq
DB search
ITAPVGLYDFRSPQPGMGFNLSRGPLSPRPSPGCPQPPIPPPPSDQQQQQQQQQQHPPPD
SSKSAVPXKPGPAPRVGSAPPASGSAXAPPAIPATTGGPPGAPLPALPISGVPTTPPGAR
GTPPPFASXPKGGTLPAERKPGGGPGPSAPGGHPEPLHGGGRESRGGRQHHPLYHWQQPQ
GAPAGGPGGRGGEMALLRRPGEKTYTQRSRLFVGNLPADITEDEFKRLFAKYGEPGEVFI
NKGKGFGLIKLESRALAKIAKAELDNTPMRGRQLLVRFATHAAALSVRNLSPYVSNELLE
EAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFQRCSEGVFLLTTTPRPVIVE
PFEQLNDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQV
EKNMKDAKEKFESEMEDAYREHQANYLHQGRMKYQEETRHMEEFHNQKVQKCKQMQLRQE
EKRCKREEEMMIRQRKMEEQMRHQREESYSQMGYMDTRERDMRMGGGGAMNMGDAHGSGS
QKCPPLSGGGGGGSIGYEANPRVPPATMSGSMMGSDKSTEPFGQEEDAEMPIWVPEKAVC
HHDGFNSETQTPVQKIEDHFISGGAEATAALKPQWRKRTRKRKQPLKDALNVDPPTWAQI
KGLTRRAWDVIESQGATVTPALMFMTMLAIVSCQSAASLCDPSSSTPAEIYQLWLKNKEG
EDTKVE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
attacggcccctgtcggcctctacgatttccgctctccgcagcctggcatgggcttcaat
ctgagccggggcccactgagcccacgccccagcccaggctgccctcagcctccgatcccg
ccgccgccctcggaccagcagcagcagcagcagcagcagcagcagcatccgccgccagac
tcgtccaaatccgcggttcctntaaagcccggccccgctcccagggtaggcagcgcgccg
ccggcttccggctcggctncggctccgcccgccattcctgcgactaccgggggtcccccg
ggggcgcctctgcccgcgctgccgatcagcggcgtcccgaccactccccccggggcccgc
ggcacgccgcctcccttcgcgagcnaacccaaaggcggcacgctgcctgcagagcggaag
cccggcggcggcccgggcccgagcgctcctggcggccaccccgagccactgcacggcgga
ggcagggagtcccgcgggggccgccagcaccatccgctgtaccactggcagcagcctcag
ggtgccccggccggcgggcccggcggccgcggcggagagatggctctcttgaggaggcct
ggagagaaaacttacacacagcgtagtcggttgtttgttgggaatctacctgctgatatc
acagaggatgaattcaaaaggctatttgcaaaatacggagaaccaggagaagtttttatc
aataaaggcaaaggattcggacttattaaacttgaatcgagagccttggctaaaattgcc
aaagccgaacttgataatacacccatgagaggtaggcagcttctggttcgctttgccaca
catgctgctgccctctctgttcgtaatctttcaccttacgtgtccaatgaacttttggaa
gaagcctttagccagtttggtcctattgaaagggctgttgtaattgtagatgatcgtgga
agatctacagggaaaggtattgttgaatttgcttctaaaccagcagcaagaaaggcattt
cagcgatgcagcgaaggtgttttcctactgacgacaactccacgtccagttattgtggaa
ccatttgaacaattaaatgatgaagatggtcttcctgaaaaacttgcacagaagaatcca
atgtatcaaaaggagagagaaacaccacctcgttttgctcagcatggcacatttgagtat
gaatattctcagaggtggaagtccttggatgaaatggaaaaacagcaaagagaacaagtt
gaaaaaaacatgaaggatgcaaaagaaaagtttgaaagtgaaatggaagatgcctatcgt
gagcatcaagcaaattatttgcatcaaggtcggatgaaataccaggaagaaacgagacat
atggaagaatttcacaatcaaaaagtgcagaaatgtaaacaaatgcaattgaggcaagag
gagaaacgatgcaaaagggaggaagagatgatgattcgccagcgtaaaatggaagaacaa
atgagacaccaaagagaagaaagttacagccagatgggctacatggacacaagagaaaga
gacatgagaatgggtggcggaggagcaatgaacatgggagatgcccatggttcaggaagc
caaaaatgtccacctctaagtggtggtggtggtggtggtagcattggttatgaagctaat
cctagagttccaccagcaaccatgagtggttccatgatgggaagcgacaagagtactgag
ccctttgggcaggaagaagatgctgagatgccaatttgggtacctgagaaagcagtgtgt
catcacgatggattcaacagtgagactcaaaccccagttcagaagatagaggatcacttc
ataagcggtggtgctgaagcaacagctgccctcaaaccccagtggagaaaaagaaccagg
aaaaggaagcagccattgaaagatgcactaaatgtagatcccccaacttgggctcagatt
aaaggactgacgaggagagcttgggatgtgattgagagtcaaggagccactgtgacgcca
gctctcatgtttatgacgatgctggctattgtaagttgccagtcagctgcaagcttgtgt
gatcccagttccagcactccagcagaaatatatcagttatggttaaaaaataaagaaggg
gaagatacaaaggttgaatga
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