Sciurus carolinensis (gray squirrel): 124983022
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Entry
124983022 CDS
T08117
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124983022
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124983022
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
124983022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-RING_5
Sina_ZnF
zf-C3HC4_4
zf-C3HC4_3
zf-rbx1
TRAF3_RING
PDZ_Tricorn
zf-TRAF
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
124983022
NCBI-ProteinID:
XP_047405833
LinkDB
All DBs
Position
4:102126701..102485059
Genome browser
AA seq
1041 aa
AA seq
DB search
MGFALERFAEAVDPAFQCKLCGQVLEEPLCTPCGHIFCASCLLPWAARRRRCPLQCQPLA
PGELYRVLPLRSLIQKLRIQCDYRARGCGHTVRLQELAEHVEHCDFGPASLCRSLPRCAL
GRGGYRGSGEVPARGGCRPATRARPGGDTGGGPPVGRCGSGQGPKSQVLAWRQREKALLQ
QLWTLQGEVQLTARRYQEKFTQYMAHIRNFARDLDRGHRRDEEQKSFTIVLERENDTLGF
NIIGGRPNQNNQEEPSTEGIYVSKILENGPADRADGLEVHDKIIEVNGKDLSKATHEEAV
EAFRNAKEPIVVQVLRRTPLSRPTYGTVPEVQLMNASTQTDITFEHIMALAKLRPPTPPV
PDICPFLLSDSCHSLHPMDHEFYEDNEYLSSLPADADRTEDFEYEEVELCRVSSQEKLGL
TVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSSDEC
KRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEQHNEAMQHTANEVEQPKKQEEEE
GTTDTATSSSNNHEKDSGVGRTDESLRNEESSEQENAVEDPSGTSLKSKRELGQSQDTLG
SVELQCNESFVCGEYIDSDCVGNHDEEECERFRQLLELKCKIQNHGEYDLYYSSSTIECN
QGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSLD
MQRGKLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRLINLTNKKNLRST
IATHQAPSGQSSKESTSTKTKTTEQVCSTESQEKVLESSTLPDQEKTVSEHVPYLSPYHS
SSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRS
DGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKE
QRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMT
HGAKSPDGTRVHNAFLSVTTV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgctttgcggaagcagtggacccggctttccagtgcaagctg
tgcggccaggtgctggaggagcccctgtgcacgccttgcgggcacatcttctgcgccagc
tgtctgctaccctgggcggcgcggagacgccggtgcccgctacagtgccaaccgctggcg
ccaggagagctgtatagggtgctgccgctgcgcagcctcatccagaagctgcgcatccag
tgcgactaccgcgcgcgtggctgtggccacacagtccggctgcaggagctggcagagcac
gtcgagcactgtgacttcggcccagccagtctctgccgcagcctcccgcgctgcgccttg
ggccggggcggctaccgaggcagcggggaagttcccgcgcgggggggctgcaggccagcg
accagggcccgcccgggcggggacacaggcggaggaccaccagtcggccgctgcggcagc
ggacaggggcccaagtctcaggtcctcgcctggaggcagcgtgagaaggcgctgctgcaa
cagctctggacgctgcagggcgaggtacagctcacagcccgcaggtatcaggagaagttc
acccagtacatggctcacatccgcaacttcgcccgggacctggaccgcggccaccgcagg
gatgaagaacagaagtcatttaccattgtgttagaaagagaaaatgacacattgggattc
aacattataggaggtcgaccaaatcagaataatcaagaagaaccatctactgaaggaatt
tatgtttcaaaaattttagaaaatggacctgctgacagagcagatggtctggaggttcat
gacaaaatcattgaggtcaatgggaaagatctctcaaaggccacccatgaagaggcagtg
gaagcttttcgaaatgccaaggagcccatcgtggtgcaggtgttaaggcgaactcctctc
agtagacccacctatggaacggtccccgaagtgcagctcatgaatgccagcacccagact
gacatcacctttgaacacatcatggccctggccaagctgcggccacctaccccgccagtg
ccagacatctgtccgtttctgctgtcagacagctgccattctcttcatccaatggaccat
gaattttatgaggacaacgagtatctttccagcttgcctgctgatgcagacagaacagag
gactttgaatatgaggaggtcgagctgtgtcgtgttagcagtcaagagaagctcggcctg
acagtctgctaccgaacagatgatgaagaagacacaggcatttatgtcagcgaggtagat
ccaaatagcattgctgccaaggatggacggattcgagaaggggatcgtattttgcaaata
aatggggaagatgttcagaatcgagaagaagcagtggcattgctgtcaagcgatgagtgt
aagagaatcgtgctgcttgttgcaaggccagagattcagctggatgaaggctggctggaa
gatgaaaggaatgaattcttagaggagttaaacttagaaatgttggaagaacagcataat
gaagcaatgcagcacactgccaatgaggtggagcagccaaaaaagcaagaagaagaagaa
ggtacaacagacacagcaacatcctcctcaaacaaccatgaaaaggacagtggggtgggg
cgcacagatgagagcctgagaaatgaggagagctcagagcaggagaacgcagtggaggac
cccagcggtacatctttgaagagcaagagagagctggggcaaagccaagacaccctagga
agcgtggaacttcaatgcaacgagagctttgtgtgcggtgaatacattgactcagactgt
gttggcaaccacgatgaggaggagtgtgaaagattccggcagctcttggagctcaaatgc
aagattcaaaaccatggagagtatgacctgtattactcaagcagcacaattgagtgcaat
caaggggagcaagagggagtagagcatgagctacagttacttaatgaagagctaagaaac
attgagcttgagtgccagaatatcatgcaggctcacaggctccagaaagtgacagatcaa
tatggagacatctgggctttgcatgatggaggcttccgaaattataacaccagcctcgat
atgcaaaggggaaaattagatgacatcattgaacatccagaaaagtcagacaaggacagt
tctagtgcttacaacacagctgaaagttgcagaagtacaccactaactgtagaccgatcc
cctgacagttcccttcccagactcatcaacctcaccaataagaaaaacctgagaagcaca
attgcaacccatcaagcaccttctggacagagtagcaaagagtcaacgtccaccaaaacc
aaaaccactgaacaagtttgtagcactgaaagccaggagaaggttttggaaagcagcacg
cttccggatcaggagaagacagtcagtgaacatgtcccttacctctctccttaccacagc
tcctcctataggtatgcaaacatcccagcacatgcccgccattatcaaagctacatgcag
ttaattcaacagaagtctgcggtggagtatgcccagagccagctcagtttggtgagcatg
tgcaaggaatctcagaagtgttctgagcccaagatggagtggaaggtaaaaattaggagc
gacgggacccggtacatcaccaagagaccagtgcgagaccgaattctgaaggaacgtgcc
ttaaagatcaaggaggagcggagtggcatgactacagacgacgacaccatgagtgagatg
aaaatggggcgctactggagcaaagaggagaggaagcaacacctggttcgggccaaagag
cagcgtcggcgccgggagttcatgatgcggagccggctggaatgcctcaaggagagtccc
cagagtggcagcgagggcaagaaggaaatcaacatcattgaactgagtcacaagaagatg
atgaagaagagaaacaagaaaattttggataactggatgacaatccaagaactgatgacc
cacggcgccaagtctcctgatggcacgagagttcataatgcgtttttgtccgtcaccacc
gtatga
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integrated database retrieval system
