Sciurus carolinensis (gray squirrel): 124983049
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Entry
124983049 CDS
T08117
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124983049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124983049
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124983049
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124983049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
124983049
NCBI-ProteinID:
XP_047405903
LinkDB
All DBs
Position
4:129147507..129246540
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AA seq
550 aa
AA seq
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MRTVRKGHDSMVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMF
PHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHV
TPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSS
PSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDF
PALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKD
PTSSNDDSKSNLNTSGKPTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGM
VTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRP
QDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWR
YHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPST
FNYNPAQQAF
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcgtactgtgaggaaaggacacgactctatggtgaggactgatggacatacattatct
gagaaaagaaactaccaggtgacaaacagcatgtttggtgcttcaagaaagaagtttgta
gagggggtcgacagtgactaccatgacgaaaacatgtactacagccagtcttctatgttc
ccccatcggtcagaaaaagatatgctggcatcaccatctacatcaggtcagctgtctcag
tttggggcaagtttatacgggcaacaaagtgcactaggccttccaatgaggggaatgagc
aacaatacccctcagttaaatcgcagcttatcacaaggcactcagttaccgagccacgtc
acgccaacaacaggggtaccaacaatgtcacttcacacgcctccatctccaagcaggggt
attttgcctatgaatcctaggaatatgatgaaccactcccaggttggtcagggcattgga
attcctagcaggacaaatagcatgagcagttcagggttaggtagccccaacagaagctcg
ccaagcataatatgtatgccaaagcagcaaccttctcgacagccttttactgtgaacagt
atgtctggatttggaatgaacaggaatcaggcatttggaatgaataactccttatcaagt
aacatttttaatggaacagatggaagtgaaaatgtgacaggattggacctttcagatttt
ccagcattagcagaccgaaacagaagggaaggaagtggtaacccaactccattaataaac
cccttggctggaagagctccatatgttggaatggtaacaaaaccagcaaatgagcaatcc
caggacttctcaatacacaacgaagattttccagcattacctggttccagctataaagat
ccaacatcaagtaatgatgacagtaaatctaatttgaatacatctggcaagccaacttca
agtacagatggacccaaattccctggagataaaagctcaacaacacaaaataataatcag
cagaaaaaagggatccaggtgttacctgatggtcgggttactaacattcctcaaggaatg
gtgacggaccaatttggaatgattggcctgttaacatttatcagggcagcagagacagac
ccaggaatggtacatcttgctttaggaagtgacttaacaacattaggcctcaatctgaac
tctcctgaaaatctctaccccaaatttgcatcaccctgggcatcttcaccctgtcgacct
caagacatagacttccatgttccatctgagtacttaacgaacattcacattagggataag
ctggctgcaataaaacttggtcgatatggagaagaccttctcttctatctctattacatg
aatggaggagacgtattacaacttttagctgcagtagagctttttaaccgtgattggaga
taccacaaagaagaaagagtatggattaccagggcaccaggcatggaaccaacaatgaaa
accaatacatacgagaggggaacatattacttctttgactgtcttaactggaggaaagta
gctaaggagttccatctggaatatgacaaattagaagaacggcctcatctgccatccacc
ttcaactacaaccctgctcaacaagccttctaa
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