KEGG   Sciurus carolinensis (gray squirrel): 124983277
Entry
124983277         CDS       T08117                                 
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-5-like
  KO
K06484  integrin alpha 5
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03266  Virion - Herpesvirus
ncar04145  Phagosome
ncar04151  PI3K-Akt signaling pathway
ncar04510  Focal adhesion
ncar04512  ECM-receptor interaction
ncar04640  Hematopoietic cell lineage
ncar04810  Regulation of actin cytoskeleton
ncar04820  Cytoskeleton in muscle cells
ncar05100  Bacterial invasion of epithelial cells
ncar05133  Pertussis
ncar05135  Yersinia infection
ncar05165  Human papillomavirus infection
ncar05168  Herpes simplex virus 1 infection
ncar05205  Proteoglycans in cancer
ncar05206  MicroRNAs in cancer
ncar05410  Hypertrophic cardiomyopathy
ncar05412  Arrhythmogenic right ventricular cardiomyopathy
ncar05414  Dilated cardiomyopathy
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03266 Virion - Herpesvirus
    124983277
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    124983277
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    124983277
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    124983277
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    124983277
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    124983277
   04810 Regulation of actin cytoskeleton
    124983277
 09150 Organismal Systems
  09151 Immune system
   04640 Hematopoietic cell lineage
    124983277
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    124983277
   05205 Proteoglycans in cancer
    124983277
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    124983277
   05165 Human papillomavirus infection
    124983277
  09171 Infectious disease: bacterial
   05135 Yersinia infection
    124983277
   05133 Pertussis
    124983277
   05100 Bacterial invasion of epithelial cells
    124983277
  09166 Cardiovascular disease
   05410 Hypertrophic cardiomyopathy
    124983277
   05412 Arrhythmogenic right ventricular cardiomyopathy
    124983277
   05414 Dilated cardiomyopathy
    124983277
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncar04147]
    124983277
   04515 Cell adhesion molecules [BR:ncar04515]
    124983277
   04090 CD molecules [BR:ncar04090]
    124983277
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   124983277
Cell adhesion molecules [BR:ncar04515]
 Integrins
  Integrin alpha subunits
   124983277
CD molecules [BR:ncar04090]
 Proteins
  124983277
SSDB
Motif
Pfam: Integrin_A_Ig_3 Integrin_A_Ig_1 Integrin_A_Ig_2 FG-GAP FG-GAP_3 Integrin_alpha ITGAX-like_Ig_3 DUF5539
Other DBs
NCBI-GeneID: 124983277
NCBI-ProteinID: XP_047406391
LinkDB
Position
4:complement(114291197..114313964)
AA seq 1059 aa
MGSRTPGSPLHAARLHWGPRRRAQLPLLLPPLLPPLLLLLLLPPPPRVGGFNLDSEAPAV
LSGPPGSFFGFSVEFYRPGTDGVSVLVGAPKANTSQPGVLQGGAVYVCPWAASPAQCTPH
RIDSKGSRMLESSLSSTXGEEPVEYKSLQWFGATVRAHDSSILACAPLYSWRTEKEPLSD
PVGTCYLSTDNFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQG
QILSATQQQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVA
GVPKGNLTYGYVTILNGSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLLVGAPLLM
ERTADGRPQEVGRVYIYLQHLAGIEPTPTLTLTGRDEFGRFGSSLTPLGDLDQDGYNDVA
IGAPFGGETQQGLVFVFPGGPGGLGSKPSQVLQPLWATGHTPDFFGSALRGGRDLDGNGY
PDLIVGSFGVDKAVVYRGRPIVSASASLTIFPAMFNPEERSCSLEGSPVACINLSFCLNA
SGKHVPNSIGFAVELQLDWQKQKGGVRRALFLASRQATLTQILLIQNGAREDCREMKIYL
RNESEFRDKLSPIHIALNFSLDPQAPMDSHGLRPVLHYQSKNRIEDKAQILLDCGEDNIC
VPDLQLEVFGEQKHVYLGDKNALNLTFHAQNAGEGGAYEAELRVTAPPEAEYSGLVRHPG
NFSSLSCDYSTVNQSRLLVCDLGNPMKAGASLWGGLRFTVPHLQDTKKTIQFDFQILSKN
LNNSQSDVVSFQLSVEAQAQVSLNGVSKPEAVFFPVSDWHPRGQPQKEGDLGPAVHHVYE
LINLGPSTISQGILELSCPQAREGQQFLYVTRVTGLSNCTSRYPPNPEGLELEPEGSPHH
LQRREAPGRSPASSGPQVLKCPEAECFRLRCELGPLHRQESRSLQLHFRVWAKTFLQKEH
QSFSLQCEAVYEALKMPYRIQPQQLPQKKLQVATAVQWTKAEGNNGVPLWIIILAILFGL
LLLGLLIYILYKLGFFKRSLPYGTAMEKAQLKPPATSDA
NT seq 3180 nt   +upstreamnt  +downstreamnt
atggggagccggacgccagggtcccctctccacgcggcgcggctgcactggggtccccgg
cgccgagcccagctgccgctgctgctgccgcccttgctgccgccgctgctgctgctcctg
ctgctgccgccgccacccagggtcgggggcttcaacttagactcggaggccccagcagtg
ctctctgggcccccgggctccttcttcggcttctctgtagagttttaccggccgggaaca
gacggggtcagtgtgctggtgggagcacccaaggccaacaccagccagccgggagtgctg
cagggtggtgctgtctacgtctgtccctgggctgccagccctgcacagtgcaccccccat
cgaattgacagcaaaggctcccggatgctggagtcctcactgtccagtacangaggagag
gagcctgtggaatataagtccttgcagtggttcggagcaacagttcgagcccatgactcc
tccatcttggcatgtgctccactatatagctggcgcacagagaaggaaccactgagtgac
cctgtgggcacctgctacctctccacagacaacttcacccgaattctggagtatgcccct
tgccgctcagatttcagctgggcagcagggcaaggttactgccaagggggcttcagtgcc
gagttcaccaagaccggccgtgtggtcctgggtggaccagggagctatttctggcaaggc
cagatcctatccgccactcagcagcagattgcagaatcctattaccctgagtacctgatc
aacctggttcaggggcagctgcagactcgacaggccagctccatctacgatgacagttac
ctgggatactctgtggctgtgggtgaattcagtggcgatgacacagaagactttgttgct
ggtgtgcccaaagggaacctcacctatggctacgtcaccatccttaatggctcagacatc
cgatccctctacaacttctcaggggaacagatggcctcctacttcggctatgcagtggct
gccacagacgtcaatggagacgggctggatgacctgctagtgggggcacccctactcatg
gagcggacagccgatgggcggccccaggaggtgggcagggtctacatctacctgcagcac
ctggccggcatagagcccacgcccacccttaccctcactggccgtgatgagtttggcaga
tttggcagctccttgacccccttgggggacttggaccaggatggctacaatgatgtggcc
attggggctccctttggtggggagacccagcaggggctagtgtttgtattccctgggggc
ccagggggactgggctctaagccttcccaggttctgcagcctctgtgggcaactggccac
accccagacttctttggctctgcccttcgaggaggccgagacctagatggcaacggatac
cctgatctgattgtggggtcctttggtgtggacaaggctgttgtgtacaggggtcgcccc
attgtgtctgccagtgcctccctcaccatcttccctgccatgttcaacccagaagaacgc
agctgcagcttggaggggagccctgtggcttgcatcaaccttagcttctgcctcaatgct
tctggaaagcatgtccccaactccattggcttcgcagtggagctccagctggattggcag
aagcagaagggaggggtacggcgggcactcttcctggcctccagacaggcgaccctgacc
cagatactgctcatccagaatggggctcgggaggactgcagagagatgaagatctacctc
aggaatgaatcagaattccgagataaactctccccgattcacatcgccctcaacttctcc
ttggatccccaagcccccatggatagccatggcctccgacccgtcctgcattaccagagc
aagaaccggatagaggacaaggctcagatcttgctggactgtggagaagacaacatctgt
gtgcctgacctacagctggaagtatttggggagcagaagcacgtgtacctaggtgacaag
aatgccctgaacctcactttccacgcccagaacgcgggtgagggtggtgcctatgaggct
gagcttcgggtcacggcccctccggaggctgagtactcaggacttgtcagacacccaggg
aacttctccagcctgagctgcgactattctactgtgaaccagagccgcctgctggtgtgt
gacctgggcaaccccatgaaggcaggagccagtctctggggtggccttcggttcactgtc
cctcacctacaggacacaaagaaaaccatccagtttgacttccagatcctcagcaagaat
ctcaacaactcgcagagcgatgtggtctccttccagctctctgtggaggctcaggcccag
gtctcccttaatggtgtctccaagcctgaggctgtgttcttcccagtaagcgactggcat
ccccgaggccagcctcagaaggagggggacctgggccctgccgtccaccatgtctatgag
ctcatcaacctgggccccagcaccatcagccagggcatactggagctcagctgtccccag
gcccgggaaggtcagcagttcctctatgtgaccagagtcaccggacttagcaactgtacc
agcagatacccgcctaaccccgagggcctagagctggagcccgagggttccccacaccac
ctacagagacgagaggctccaggtaggagccctgcgtcctccgggcctcaggttctgaaa
tgcccagaagctgaatgtttcaggctgcgctgtgagcttggcccactgcaccggcaagag
agccggagtctgcagctgcatttccgagtctgggccaaaaccttcctgcagaaagagcac
cagtcattcagcctgcagtgtgaagctgtgtatgaagccctgaaaatgccctaccgaatc
cagccccagcaactaccccaaaagaaacttcaggtggccacagctgtgcagtggaccaag
gcagaaggcaacaatggcgtcccactgtggatcattatcctagccatcctttttggcctc
ctgctcctaggtctgctcatctacatcctctacaagcttggattcttcaaacgctccctc
ccatatggcacggccatggagaaagctcagctcaagcctccagccacctctgatgcctga

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