Sciurus carolinensis (gray squirrel): 124983604
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Entry
124983604 CDS
T08117
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncar03016
]
124983604
Enzymes [BR:
ncar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124983604
Transfer RNA biogenesis [BR:
ncar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124983604
Prokaryotic type
tRNA splicing ligases
124983604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
124983604
NCBI-ProteinID:
XP_047406963
LinkDB
All DBs
Position
4:complement(162711385..162730189)
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagctacagttcctggaaaagatcaacaaaaactgctgg
agaatcaaaaagggctttgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggagaaattaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagccttgcctggaattgttcat
cgatctattggtcttcctgatgtccattcaggctatgggtttgctatcgggaatatggct
gcctttgatatgaatgatcctgaagcagtggtatccccaggcggtgtgggatttgacatc
aactgtggagtgcgcttgctaagaaccaatttggatgagagtgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgtcggggtgggatcaaaaggtgtg
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtcccta
agggaaggctatgcctgggctgaagacaaggagcactgtgaagagtatggaaggatgctg
caagctgaccccaacaaggtctctgcaagggccaagaaaagaggccttcctcagttgggg
accctgggagcaggtaaccactatgcagaaatccaggtggtggatgagattttcaatgag
tatgctgctaagaaaatgggcatcgaccataaaggacaagtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgccctggtagctatggaaaaagcc
atgaagagagacaagatcatagtcaatgaccgtcagttggcttgtgctcgaatcgcttct
gcagagggtcaggactacctaaagggaatggcagcagctggaaactatgcctgggtcaac
cgctcttctatgaccttcttaacccgtcaggctttcgccaaggtcttcaacacaacccct
gacgacttggacctgcatgtaatctatgatgtttctcacaatattgccaaagtagagcag
catgtggtggacggaaaggaacggacactgttggtacacaggaagggatccacccgcgct
ttcccccctcaccaccccctcattgctgttgattaccaacttaccggacagccagtgctc
attggtggcaccatgggaacctgtagctacgttcttactggcactgaacagggtatgact
gagacctttggaactacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcgg
cgtaatttagatttccaggatgttttagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaacgtcacagat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccatcaaactgagaccaatt
gctgttatcaaagggtag
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