KEGG   Sciurus carolinensis (gray squirrel): 124984409
Entry
124984409         CDS       T08117                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03030  DNA replication
ncar03410  Base excision repair
ncar03420  Nucleotide excision repair
ncar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    124984409
   03410 Base excision repair
    124984409
   03420 Nucleotide excision repair
    124984409
   03430 Mismatch repair
    124984409
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncar03032]
    124984409
   03036 Chromosome and associated proteins [BR:ncar03036]
    124984409
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124984409
DNA replication proteins [BR:ncar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    124984409
  DNA Replication Termination Factors
   ELG1-RFC complex
    124984409
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    124984409
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     124984409
  Check point factors
   HRAD17(Rad24)-RFC complex
    124984409
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 AAA Rad17 AAA_22 nSTAND6 AAA_16 ABC_tran zf-HC2 AAA_2 Sigma54_activ_2 DUF2247
Other DBs
NCBI-GeneID: 124984409
NCBI-ProteinID: XP_047407910
LinkDB
Position
5:30150381..30167782
AA seq 356 aa
MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
LETNSQRDFKVVLLTEVDKLTRDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSRRNLRKALLMCEACRVQQYPF
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL
HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtctctgggtggacaaataccggccgtgctccttggggcggctggactatcacaag
gagcaggcggcccagctgcgcaacctggttcagtgtggtgactttcctcacctgttagtg
tatggaccatcaggtgctggaaaaaagacaagaattatgtgtattctacgtgaactttat
ggtgttggagtggaaaagttgagaattgaacatcaaaccatcacaactccatctaaaaag
aaaattgaaatcagcaccattgcaagtaattaccaccttgaagttaatcccagtgatgct
ggaaatagtgaccgggtggtaattcaggagatgttgaaaacagtggcacagtcacagcaa
cttgaaacaaactctcaaagagattttaaagtggtgttattgacagaagttgataaactc
accagagatgctcaacatgctttgcgaagaaccatggaaaaatatatgtccacctgcaga
ctgatcttgtgctgcaattctacatccaaagtgataccacctattcgcagtagatgcctg
gcagttcgagtgcctgctcccagcatcgaagatatttgtcatgtgttatctactgtgtgc
aagaaggaaggtctgaatcttccttcacaactggctcacagacttgcagagaagtcccgt
agaaatctcagaaaagccctacttatgtgtgaagcctgccgagtacaacaatatcctttt
actgcagatcaagaaattcctgagacagattgggaggtgtatctgagggagacggcaaat
gctattgtcagtcagcagacgcctcaaaggctccttgaagttcgtggaaggctttatgaa
cttttaactcattgtattcctcctgagataataatgaagggccttctctcagaacttttg
cataattgtgatggacaactgaaaggggaagtggcccagatggcagcttattatgaacat
cgtctacaactgggtagcaaagccatttatcacttggaagcatttgtggccaaatttatg
gcactttataagaagttcatggaggatggattggaaggcatgatgttctga

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