Sciurus carolinensis (gray squirrel): 124984544
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Entry
124984544 CDS
T08117
Name
(RefSeq) transcription factor SPT20 homolog isoform X1
KO
K21245
transcription factor SPT20 homolog
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124984544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124984544
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
124984544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt20_SEP
Motif
Other DBs
NCBI-GeneID:
124984544
NCBI-ProteinID:
XP_047408227
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All DBs
Position
5:complement(33089228..33131582)
Genome browser
AA seq
859 aa
AA seq
DB search
MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKQKLRR
NVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEE
LPPILVDLLEKSQVNIFHCGCVIAEIRDYRQFSNMKSPGYQSRHILLRPTMQTLICDVHS
ITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNRQKMNTRPMKRCFK
RYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCN
LAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGNQYQKTKLTILQSLG
DPLYYGKIQPCKADEESDNQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELIQNEAKC
PVKMSHISSGSASLSQLSPGKETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGN
YFTPQQTSSFLKSPTPPPSSKPPSLSRKSSMDLSQVNMLSPAALSPASSSQRSGTPKPST
PTPTPSSTPHPPDAQSSTPSTPSATPTPQDSGFTPQPTLLTQFAQQQKSLSQAMPVTTIP
LSTMVTSITTGTTATQVMANTAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGIN
LSGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQ
QLSQFAPQPPQQPTTSSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAV
LSQLGSAENRPEQSLPQQRFQLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRH
TGSQSKNKMKRGTPTTPKF
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagccttagaactagctttggatcgtgcagagtatgtcattgaaagtgcacga
cagagacctcctaaaaggaaatatttatctagtggaagaaaatctgtatttcaaaaactt
tatgacttatatattgaagaatgtgaaaaagaacctgaggttaagcagaaattaagaaga
aatgtgaacttgttagagaagcttgttatgcaggagactttgtcgtgtttagtggtcaat
ctatatccaggaaatgagggatattctctgatgctcaggggaaaaaatggatcagattct
gagaccattcgactgccttatgaagaaggggaattacttgaatacttagatgcggaagaa
ttacctcctattttggttgatctcctagaaaaatctcaggttaatatttttcattgtggg
tgtgtcatagcagaaattcgtgactacaggcagttcagtaatatgaagtctcctggttac
caaagtaggcacattctcttacgtccaacaatgcagactttaatctgtgatgttcattca
ataacaagtgataatcataaatggacccaggaagacaaacttttacttgaaagccaattg
atcctagctacagctgaaccactgtgtcttgatccttctattgcagtaacttgtactgca
aacagactgctctataataggcaaaagatgaatactcgcccaatgaaacgatgtttcaag
aggtattccaggtcctctctgaatcggcagcaggatctgtctcattgtccacctcctcct
cagctgagattactggatttcttacaaaaacgaaaggaaagaaaagcaggtcagcattat
gacctcaaaatttctaaagcaggaaattgtgtagatatgtggaaaaggagtccctgtaat
ttggccgttccttctgaagtggatgtagagaaatatgctaaagtggaaaaatctatcaaa
tctgatgactcacaaccaacagtttggccagcccatgatgtaaaagatgattatgtattt
gaatgtgaagctggtaatcagtatcagaaaacaaagcttaccatcttgcaatcacttggt
gatccactttactacggtaaaatacagccatgtaaagcagatgaagaaagtgacaaccag
atgtctccatcccactcctccacagatgatcattcaaattggttcattattgggtcaaag
actgatgctgagagagttgttaatcagtatcaggagttgatccagaatgaagctaaatgt
ccagtcaagatgtcacacatctctagtggctcagccagtctgagtcagctttctccagga
aaagaaacagaacagcctgagaccgtgtcagttcaatcttcagtattggggaaaggagta
aaacatcgacctccacccatcaaacttccctcaagctcaggaaatagttcttcaggtaat
tattttacaccacaacagaccagcagctttcttaagtctccaactcctcctccttcttct
aagccaccaagtctttctcggaagtcatctatggatctcagtcaagtcaacatgctttct
ccagctgccctgtcacctgccagctcatcacaaagatctggaactcctaagccatctact
cctacaccaaccccttcatcgaccccacaccctcctgatgctcagagttcaactcctagt
accccttcagccacccctactccccaagattcaggcttcacccctcagcccactttgtta
actcagtttgctcagcagcaaaagtctctgagccaggcaatgcctgtaacgaccattcct
ctttccaccatggtaacatctataactacaggaaccacggccacccaggtcatggcaaac
actgctggacttaacttcatcaatgtagtgggctctgtttgtggggcccaggctttgatg
agtggttcaaaccccatgctgggctgtaacactggtgccataactcctgcaggaataaac
ctgagtggccttctaccctcaggaggtctgctaccaaatgcattgcccagtgcaatgcag
gcagcttctcaagcaggtgttccatttggtttaaaaaacacttcaagtctcaggccttta
aatctactccagcttcctggtggctcactcatttttaacaccctgcagcagcaacaacaa
caactctctcagtttgcaccacaaccacctcagcaacccacaacctctagccctcagcag
ccaggagagcagggttctgaacaaggttcaactagtcaagaacaggccttatctgctcag
caagctgctgttattaaccttactggagtaggaagttttatgcagtcacaggcagctgtg
ttgtctcagcttggctctgccgagaacagacctgagcaaagccttcctcagcagagattc
cagctctcctctgcctttcaacagcagcagcaacagatacaacagttgcgattcttgcag
catcaaatggctatggcagcagcagcagcacaaacagctcagctacatcggcatcggcat
acaggcagccagtcaaaaaataaaatgaagagaggcacaccaaccactccaaaattctga
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