Sciurus carolinensis (gray squirrel): 124984561
Help
Entry
124984561 CDS
T08117
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124984561
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
124984561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
Motif
Other DBs
NCBI-GeneID:
124984561
NCBI-ProteinID:
XP_047408275
LinkDB
All DBs
Position
5:124818508..124833302
Genome browser
AA seq
1905 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGG
GGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDI
RLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDR
CRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLI
SELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKK
TLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKR
RDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMC
DEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVE
ACYFNWEEAYPLPGVTYSGTDRKLALCWARALPPRPSASRSGGLEESRDRPRPLPTEPAV
RPKEPGPKRKGLGEGVPSSQRGPRRLSAEGGDKALHKLGSGGAKAKALGGAGSGGKGSTG
SGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFLESPPPCPPPGVSRGPSTFL
PEPPDTYEEDGGVYFSEGPELPTASVGPPGLLPGEVCTRDDLPSTDESGNGLPKTKEAAP
AVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEAL
HAHGYSNEASRLTVELAQDLLANPPDLKVELPPAKGKKNKVSTSRQTWVATNTLTKAAFL
LTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPNEMS
TMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWSNEMPGDEEL
GFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRE
SQTHKPQTLSSFYSSSRPATANQRSPSKHGGPSAPGVLQPLTSGSAGPTQPGNVAGAGPG
PAEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPK
KKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSS
SGSRRASASGGARTKTVEVGRYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGN
SSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQA
MEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPN
EIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAR
EGATSCTATGIRAAGEAGRGLPEGRGGPGTEPVTVAAAAVTAAATVVPVISVGSSLYPGP
GLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPA
FLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACELWGQGTVSSV
HPASTFPAIQGASLPALTTQPSPLVSGGFPPPEEEVHSQPVNPHSLHHLHAAYRVGMLAL
EMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGDRHGDAAAAEPCSCPQPPACPGLP
PTGAALPTSIHAVHPPPLDSPDPCRLRRLCECDPQCSQRLLPDTHGHDAVQRHPAEPQAQ
QTDQGAVAAGLARDDHLLSLSLAPLGPYTGTQAHGFGGPSHRGNESWLDRSSPLSSLVAQ
TGSCSWAVAWGQDVSDPRNLGLGETALSGRGRWVASGIYLAFINI
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggagctgatgttcgcggaatgggaggatggagagcgcttctcattcgaggattctgac
cgctttgaggaggattcactctgttccttcatctccgaggcggaaagcctttgccagaac
tggcggggatggcgcaaacagtcagcggggcccaattcccccactggtggcggtggcgga
ggtggcagtggcggtaccagaatgcgagatggactggtaatcccattggtggagctgtcg
gcaaagcaggtggcatttcacatcccatttgaagtggtggagaaagtttaccctccagtg
cctgagcaactccagctccgaatagctttttggagcttccctgagaatgaagaagacatt
cggctgtattcatgcttggccaatggcagtgcagatgagttccagcggggggatcagctg
ttccgcatgagggctgtaaaggacccactgcagataggattccatctgagtgctacagtg
gtgccacctcagatggttcctccaaagggggcctacaacgtggctgtgatgtttgaccgc
tgccgggtcacttcctgcagctgtacctgtggggctggggccaaatggtgcactcacgtc
gtggcactctgtctcttccgcatccacaacgcttctgcagtctgtctgcgtgccccagtc
tcagagtccttgtctcgactgcagagggaccagctgcagaagtttgctcagtacctcatc
agtgagctccctcagcagattctccctacagctcagcgtctcctggatgagctcctctcc
tcccagtcaacagccatcaatacagtgtgtggtgccccagatcccacagcagggccctcg
gcttcggaccagagcacttggtatttggatgagtcaacgctgaccgacaacatcaagaag
acattgcacaagttctgtggtccttcccctgtggtcttcagtgatgtgaactccatgtat
ctgtcttccacggagcccccagctgctgctgaatgggcatgtctgctgcgccctctgagg
ggccgtgagccagagggtgtctggaacctgcttagcattgtgcgggagatgttcaagcgg
agggatagcaatgctgcccctttgctggaaatccttactgaccagtgcctcacttatgaa
cagataacaggttggtggtacagcgtgcgcacctcagcctcccacagcagtgccagtggg
cacacaggccgtagcaatgggcagtcagaagtggcagctcatgcttgtgccagcatgtgt
gacgagatggtcacactatggagactggctgtgctggaccctgccctcagcccccagcgc
cgccgggaactgtgtgcacagttgcgccagtggcagctgaaggtgattgagaatgtaaag
cgtggacaacacaagaagaccctggagcggctttttcctggcttccgaccggcagtggag
gcctgctactttaactgggaagaggcctacccacttcctggtgtcacctacagtggcact
gaccggaagctcgctctgtgctgggcccgagccctgcccccacgtccaagcgcctcccgt
tctgggggcctggaggaatcccgggacaggccccgacctcttcctactgaacctgctgtg
cggcctaaggaacctgggcccaagcgcaagggattgggtgagggggttccctcctcacag
cggggtccccgccgcctctcagctgaagggggagataaggctctgcataagttgggttca
ggcggggccaaagccaaggcactgggtggggctggcagtgggggcaagggctcaacaggc
agtgggagcaagcgacggctgagcagtgaggacagctccctggagccagatctggcagag
atgagcctggatgacagcagcctggccctgggtgcagaggccagcacctttggtggattc
ctagagagccctccaccctgtcctccccctggtgtttcccgaggcccatccaccttccta
cctgagcccccagatacttacgaggaagatggtggtgtgtacttctcggaagggcctgag
cttcccacagcctctgttggtcctcctggcctgctccctggggaggtctgtacccgggat
gacctcccttccacagatgagagtggcaatgggcttcccaaaaccaaagaggcagcccct
gcagttggagaggaggatgatgactaccaggcgtattacctgaatgcccaggatggggct
gggggcgaggaggagaaggccgagggcggggctggggaggagcacgacctgtttgctggg
ctgaagccactggaacaggagagccgcatggaggtgttatttgcctgtgctgaggccctg
catgcacatggttatagcaatgaggcctcccgcctcactgtggagcttgcccaggacctg
ctagccaacccacccgacctcaaggtagagctgccccctgccaagggcaagaagaataaa
gtatccacaagccgtcagacctgggtggctaccaacaccctgaccaaggcagccttcctg
ttgacagtgctcagtgagcgtccagagcaccacaacctggccttccgagttggcatgttt
gccttggagctacagcggcccccagcttctaccaaggccttagaggtgaagctggcatac
caagagtctgaggtggctgccttgctcaagaaaattcctctgggtcccaatgagatgagt
accatgcggtgccgggcagaggagcttcgggaggggacactctgtgactatcggcctgtg
ttgcctctcatgttggccagtttcatctttgatgttctctgtgctccagtggtttctccc
acgggttcccggcccccaagtcgcaactggagcaatgagatgcctggagatgaggagctg
ggatttgaagcagcagttgctgccttgggcatgaagacaacagtgagcgaggcagaacat
cccctcctatgtgaaggcacacgtcgggagaagggtgacctggcattagcactcatgatc
acttacaaggacgaccaggccaagctcaagaagatcttagataaactcttggaccgagag
agccagacgcataagccacagacattgagctcattctactcatctagccgcccagctaca
gccaaccagaggtctccttcaaagcacgggggcccatctgccccaggggtcctgcagcca
ctgacctcaggctctgcagggcctactcagccagggaatgtggcaggggctgggccaggc
cctgctgagggattcacagagaagaatgtgcctgaaagttccccgcattccccatgtgag
ggtctcccacctgaggcagctttgaccccaaggccagagggaaaggttcccagccgcctg
gcacttggcagtcgtggaggctacaatggacggggctggggctccccagggcggcctaag
aagaagcatacaggcatggccagcattgacagcagtgcccctgaaacaacatcggatagt
tcccccaccttaagccggaggccacttcgtgggggctgggcccccacctcctggggtcga
ggacaagacagtgacagcattagcagctcttcctcggactccctgggctcctcgtcctcc
agtggaagtcgccgggccagtgccagtggaggggcccggacaaagacagttgaagttggc
aggtacaagggccgccgccccgagagtcatgccccccatgtacccaatcagccatcagag
gcagctgcacacttctacttcgagctggcgaagacagtgctgatcaaggcagggggcaac
agcagcacttccattttcacacatccatcttcctcagggggccaccagggtcctcaccgc
aacctgcacctttgcgccttcgagattgggctttatgcccttggcctgcacaactttgtt
tctcccaactggctgtcacgtacctattcttcccacgtctcctggattacagggcaggca
atggagattggcagtgcagccctgactatactggtagaatgctgggatgggcacctgact
ccccctgaggttgcatccctggctgacagagcatcacgggcacgagactccaatatggtg
cgggcagcggcagagctggccttaagctgcctgcctcatgcccatgcattgaaccccaat
gaaatccagcgggccctggtgcagtgcaaggagcaggataacctgatgttggagaaggcc
tgcatggcagtggaagaggcggctaagggtgggggcgtgtaccccgaagtgttgtttgag
gttgctcaccagtggttctggctatatgagcaaacagcaggtggctcatccacagcccgt
gaaggggctacaagctgtactgccactgggatcagggcagctggggaggctgggcggggg
ctgcctgagggcagggggggcccagggactgaacctgttacagtggcagcagcagcagtg
acagcagcagccacagtggttccagtcatttcagtggggtccagtttatatccaggtcca
ggactggggcatggtcactcccctggcctgcacccctacactgctttacagccccacctg
ccctgtagccctcagtacctcacccacccagctcaccccgcccatcccatgcctcatatg
ccccggcctgccgtcttccctgtgcccagctctgcatacccacagggtgtgcatcctgca
ttcctgggggcacagtacccttactcagtgacacctccctcacttgctgccactgctgtg
tctttccctgtcccttccatggcacccatcacagtccatccctaccacacagagccaggg
cttccactgcccaccagtgtggcctgtgagttgtggggacagggaacagtgagcagtgtc
catccagcatccacatttccagccatccagggtgcctcactgcctgccctgaccacacag
cccagccctttggttagtgggggctttccaccacctgaagaggaggtgcacagtcaacct
gtcaatccacacagcctgcaccacctgcatgctgcctaccgtgttggaatgctggcactg
gagatgctgggtcgccgggcacacaacgatcaccccaacaacttctcccgctcccccccc
tacactgatgatgtcaaatggttgctggggctggcagcaaagctgggagatcgtcatgga
gacgctgcagcggctgagccctgctcatgcccacaaccacctgcgtgccccggccttcca
ccaactggtgcagcgctgccaacaagcatacatgcagtacatccaccaccgcttgattca
cctgacccctgccgactacgacgactttgtgaatgcgatccgcagtgctcgcagcgcctt
ctgcctgacacccatgggcatgatgcagttcaacgacatcctgcagaacctcaagcgcag
caaacagaccaaggagctgtggcagcgggtctcgctcgagatgaccaccttctctccctg
agtctggcccccttagggccctatacagggacacaggcccatggctttgggggcccctca
cacagagggaatgaatcttggctggacagatcatctccactcagttccctggtagcccag
actggcagctgctcttgggctgtagcttggggccaagatgtctcagaccctagaaaccta
gggctgggggagacggccctatctgggagggggcgttgggtggcctctggtatttatttg
gcatttataaatatataa
DBGET
integrated database retrieval system
