Sciurus carolinensis (gray squirrel): 124984631
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Entry
124984631 CDS
T08117
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant
KO
K14407
cleavage stimulation factor subunit 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124984631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124984631
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124984631
U7-dependent histone pre-mRNA processing factors
124984631
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
124984631
NCBI-ProteinID:
XP_047408436
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Position
5:complement(96312492..96316366)
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AA seq
608 aa
AA seq
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MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
IMDPEIALKILHRKIHVTPLIPGKSQPVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHL
ARRPVKDIPPLMQTPIQSGIPAPGPIPAGVPGPGPGSLTPGGAMQAQVGIPGVGPVPLER
GQVQMSDPRAPMPRGPMTAGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGP
PMHHASGHDTRGPSSHDMRGGPLSDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRGMEARA
METEVLETRVMERRAVESCAMEARGMEARGMDARGLEMRGPGPSSRGPMTGGIQGPGPIN
IGASGPQGPRQVPSISGVGNPGGGMQGAGIQGAGIQGAGIQGGGMQGTGIQGVGIQGAGM
QGASKQGGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQ
IQKSTGAS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtttggcggtgagagaccccgcaatggatcgatcgctgcgttccgtgttcgtg
gggaacataccgtatgaggcaactgaggagcagttaaaggacattttctcggaggttggt
tctgttgtcagtttccgtctagtgtatgatagagagacgggaaaacccaaaggttatggc
ttctgcgagtaccaagaccaggagaccgcgcttagtgccatgcggaatctcaatgggcgt
gagttcagtgggagagcgcttcgggtggacaatgctgccagtgaaaagaataaggaggag
ttaaagagtctggggcctgcagcacccatcattgactcaccctatggggaccccatcgat
ccagaagatgctcctgaatcaattaccagagcagttgccagtctccccccggagcagatg
tttgagctgatgaagcagatgaagctctgtgtccagaatagtcaccaagaagctcgaaac
atgttacttcagaatccacaactggcttatgcgctgctgcaggcgcaagtagtgatgcga
atcatggatcctgaaattgctctgaaaattctgcatcgaaagatacatgtcacaccactg
atcccaggcaaatctcagcctgtgtctggccctggccctggtcctggccctggtctgtgc
ccaggacctaatgttctactgaaccaacagaatcctccagctcctcagcctcaacatttg
gctagaagacctgttaaggacattcctcctctgatgcagactcctatccagagtggaatt
ccagctccagggccaataccagcaggagttcctggacctggtcctggttccttaactcct
ggaggagcaatgcaggcacaagttggaataccaggagttggcccagtgcctttggaacgg
ggacaagtacagatgtcagatcctagagctcctatgcctcgtggacccatgactgctggt
ggcttacctcctcgaggactgttaggagatgctccaaatgacccacgtggagggactctg
ctttcagttactggggaagtagaacccagaggttatctgggtccaccccatcagggtccc
ccgatgcaccatgcctctggtcatgacacccgtggcccttcctcccatgatatgagagga
gggccattatcagatcccagattgctaattggagagcctagaggacccatgatagatcaa
aggggtctacctatggatggtagaggaggtagagattctcgagggatggaggctcgagcc
atggaaacagaagtcttagagacaagagtaatggagagaagagcagtggaaagctgtgca
atggaagccagggggatggaagcaagaggcatggatgcaagaggattagagatgagaggc
cctggccctagttcaagaggccccatgactggtggaatccagggtcctggtcccattaat
ataggggcaagtggtcctcagggacctagacaggtcccaagcatttcaggagtgggaaat
cctggaggtggtatgcagggagcaggtatacaaggagcaggtattcagggagcaggaata
caaggaggaggaatgcagggaacaggcatacaaggtgtgggcatacaaggagcaggtatg
cagggggcaagcaagcaaggtggaggccagccaagcagttttagtcctggacagagtcag
gtaactccacaggatcaagaaaaagcagctttgatcatgcaggttcttcagctgaccgca
gatcagattgccatgctgccacctgagcaaaggcagagtatcctgattttaaaggagcaa
atccagaaatccactggagcatcttga
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