Sciurus carolinensis (gray squirrel): 124984685
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Entry
124984685 CDS
T08117
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ncar03037
]
124984685
Cilium and associated proteins [BR:
ncar03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
124984685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_7
TPR_6
TPR_14
TPR_19
TPR_16
TPR_11
ANAPC3
TPR_17
TPR_10
TPR_CcmH_CycH
ARM_TT21_4th
ARM_TT21_5th
ARM_TT21_N
TPR-S
ARM_TT21_C
TPR_21
DUF6584
TPR_15
HEAT_Nup120
HAT_PRP39_C
RPN7
ARM_TT21_2nd
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
124984685
NCBI-ProteinID:
XP_047408568
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Position
5:complement(85735639..85892948)
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AA seq
825 aa
AA seq
DB search
MMQNVHLAPETDDDDLYSGYNDYNPIYDTEELENDTGFQQAVRTSHGRRPPITAKIPSTA
VTRPIATGYGSKTSLTSSMGRPMTGAIQDGVTRPMTAVRAAGFTKASLRGSAFDPLGQSR
GPAPPLETKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR
QREQVTTPENINLDLTYSVLFNLACQYSANEMYAEALNTYQVILKNKMFSNAGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVTFIKTGQYSDAINSFEHIMS
MAPNLKAGFNLILSYFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLVIEAI
KNDPLRQMERERKAMAEKYIMTAAKLIAPVIETSFAIGYDWCVEVVKASQYVELANDLEI
NKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENDFVQASSYADLAVNS
DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALD
CFLKLHAILRNSAQVLYQIANVYELMEDPNQAIEWLMQLISVVPTDSKALSKLGELYDSE
GDKSQAFQYYYESYRCFPSNIEVIEWLGAYYVDTQFCEKAIQYFERASLIQPTQVKWQLM
VASCFRRSGNYQKALDTYKDIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKM
KEIREQRIKSGRDGSGGSRGKREGSAGSDSAQNSSASSKGERLSAKLRALPGTNEPYESS
SNKEIDASYVDPLGPQIERPKTAVKKRIDEDDFADEELGDDLLPE
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaatgtgcacctggctccagagacagatgatgatgatctttattctggttat
aatgactacaatccaatctatgatactgaggaattggagaatgatacaggttttcagcaa
gcagtaagaacaagtcatggcagaagacctcctataactgctaaaataccaagcacggca
gttactagacctatagctactggatatgggtccaagacatccctgacgtcatcaatggga
agaccaatgacaggggctattcaggatggagttactagacccatgacagcagtgagagca
gcaggttttaccaaagcatctttgagaggctctgcatttgacccacttggtcagtcaaga
ggccctgctcctcctttggaaaccaaaaacgaagatagtccagaagaaaagattagacaa
ttagagaagaaagtaaatgagttggtagaagaaagctgtattgctaacagttgtggagac
ttaaaattggccttagaaaaggcaaaagatgcaggaagaaaagagagagtcctggtgaga
caacgggaacaagttacaactccagaaaatatcaatttggatttaacttactcagttctt
ttcaacttggcctgtcagtattcagctaatgaaatgtatgctgaggcactaaacacatat
caagttatactgaaaaacaagatgtttagcaatgcggggagactgaaagtgaatatggga
aatatttacttaaagcaaagaaattattccaaagccattaaattctaccgaatggcctta
gatcaaatcccaagtgtccataaagaaatgaggattaaaataatgcagaacattggagtt
acatttattaaaactggtcaatattcagatgccattaattcatttgagcatataatgagc
atggcaccaaatctgaaagcaggcttcaacctgattcttagttattttgctattggagat
cgagaaaaaatgaagaaggcattccagaaattgattgctgttccattagaaattgatgaa
gatgataaatatatttcaccaagtgatgatccccatactaacctagtgattgaagctata
aaaaatgatcctctcaggcaaatggaacgtgaaaggaaagccatggcagaaaaatacatc
atgactgctgcaaaactcattgctcctgtaattgaaacatcttttgctataggttatgat
tggtgtgtggaagtagtgaaagcttctcaatatgtagagctagccaatgatctggaaata
aacaaggcaatcacgtacttgagacagaaagacttcaaccaagcagtagataccttaaaa
atgtttgagaaaaaggacagtagagtgaaaagtgcagctgcaaccaatctctcattcctg
tattatctggaaaatgattttgtacaagccagcagctatgcagatttagctgtgaactct
gatagatataacccatcagctcttaccaataaagggaatacagtttttgcaaatggggat
tatgagaaggcagctgaattctataaagaggctctaagaaatgattcttcttgtactgaa
gccctttataatattggccttacttacaagaagctaaaccgactagatgaggctttggat
tgtttcctgaaacttcatgcaattttacgaaacagcgcccaagttctttatcagatagca
aatgtatatgaattaatggaagatccaaatcaagctattgaatggctaatgcagctgatc
agtgttgttcccactgattctaaagctttgtctaaactaggagaactatatgatagtgaa
ggagataagtcccaagcattccaatattactatgagtcatataggtgtttcccttctaat
attgaagtaattgaatggcttggagcctactacgttgatactcagttttgtgaaaaagcc
attcaatactttgaaagagcttctcttatacagcctacacaagtgaaatggcagctgatg
gtagctagttgttttagaagaagtggtaactaccaaaaagcattagatacatacaaagat
attcacagaaaatttcctgaaaatgttgaatgtcttcgtttcttggttcgcctctgcaca
gatattggattaaaagaagttcaagaatatgccacgaaactcaagaggttggaaaaaatg
aaagaaataagggaacagcgcataaagtctggcagagatggcagtgggggctctcgcggc
aaaagagagggaagtgctggcagtgatagtgcccagaacagtagtgccagtagtaaaggt
gaacgactaagtgccaaactcagagctttacctgggacaaatgaaccttatgaaagtagc
agtaacaaagaaatagatgcttcctatgtggatccacttggccctcaaatagaaagacca
aaaactgcagtcaaaaaaagaatcgatgaggatgattttgctgatgaagagttaggagat
gatttgcttccagaataa
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