Sciurus carolinensis (gray squirrel): 124984708
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Entry
124984708 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124984708
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
124984708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TOR1L1_N
Vac14_Fab1_bd
HEAT_GCN1
HEAT_MROH2B_C
HEAT_2
HEAT_GCN1_C
TPR_Trm732_C
HEAT_GCN1_C_2
UTP20
ARM_ECM29
Rac1
Spe-44
Motif
Other DBs
NCBI-GeneID:
124984708
NCBI-ProteinID:
XP_047408628
LinkDB
All DBs
Position
5:139965489..140063843
Genome browser
AA seq
1849 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI
AAGQAVEAIVKNVPEWNPVPRTKQETTSESSMEDSSTTDRLNFDRFDICRLLQHGASLLG
SAGAEFEVQDEKSGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTS
AALVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVETNEKSNDSTDG
EPEEKRRKIANVVVNQTANDSKVLIDNIPDSSSLIEETNEWPLESFCEELCNDLFNPSWE
VRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVS
DEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQEQWEVRHGGLLGIKYALAVR
QDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDAL
LELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALET
LFTLLSTQDQNSSSWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVV
AAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQSKEVLQEYIAGA
DTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNMVTQEIKPAESLGQLLLFHLNS
KSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQ
LISSLADAHIEVGNRVNNNVLTIDQANDLVTTVFNEVTSTFDLNSQVLQQLDSKRQQVQM
TVTETNQEWQVLQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQC
IAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGPSSEKDGM
HHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADLPAGSSGNILIELDEAQKPY
LVQRRGAEFALTTIVKHFGGEMAVKLPHLWDAMVGPLKNIIDLNNFDGKSLLERGDGPAQ
ELVNSLQVFETAAASMDSELHPLLVQHLSHLYMCLQYPSTAVRHMAARCVGVMSKIATME
TMNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTD
SVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQLKAKERHFLEQLLDGKKLENYKIPV
PINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK
LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV
ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV
LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL
LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKP
KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTXKLAVQNSSLHDIQHAPKLSALK
QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS
IPPGQRHSIVSRFNTDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA
HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL
DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctccaggcttgatcgtctttttatcttactggatactggcactactccagtt
acaagaaaagctgctgcacagcaacttggagaagtggtgaagcttcatcctcatgaacta
aataatctgttatctaaagtgttgatatatttaaggagtgcaaattgggatacccggatt
gcagcaggacaagcagttgaggctatagtgaaaaatgtgcccgaatggaatcccgtgcca
agaacaaaacaagaaactacttcagaaagttcaatggaagattcatctactacagaccga
ttgaattttgacagatttgacatatgtagactgttacaacatggtgcatcacttttaggg
tctgctggtgcagaatttgaagtccaagatgaaaaatcaggtgaagtagatcctaaagag
aggatagcacgccagcgaaaactattacagaagaaacttggccttaatatgggagaagca
attggaatgagtactgaagaactcttcaatgatgaagatttggattatacaccaacttca
gcagcccttgtaaacaaacaacctacgctccaggcagcagagttgattgactcagaattt
cgagcaggaatgagcaatagacaaaagaataaagctaaaagaatggccaaactatttgca
aaacagagatccagggatgcagtggaaactaatgagaagagcaatgatagcactgatggg
gagcctgaagaaaagagacggaaaatagcaaatgttgttgttaatcagactgcaaatgat
tccaaagtcttgattgataacattccagacagctcttccttaatcgaagagacaaatgaa
tggcctttggaaagcttttgtgaagaactttgcaatgacctttttaatccctcctgggag
gttcgacatggtgcaggcactggactaagggaaattcttaaagctcatggaaagagtggt
ggtaaaatgggagatagcactttagaagagatgattcagcagcatcaagagtggttggaa
gacttagttattagactcctttgtgtttttgcattggatagatttggagactttgtttct
gatgaagttgtagcaccagtgcgcgaaacttgtgctcaaacattaggtgtggttttaaaa
cacatgaatgaaacaggagttcataagacggtggatgtgctattaaaattacttacacaa
gaacaatgggaagttaggcatggtggtctgctgggaataaaatatgctttggcagttcgt
caggatgtaattaatactttattgcccaaagttttaactagaataattgaaggactccaa
gatcttgatgatgatgtcagagcagttgctgcagcatcattagtgcctgtagtcgaaagc
ctcgtctatcttcagacacaaaaagtacccttcattataaatacattatgggatgctctt
ctggaattagatgatctcacagcttcaacaaatagtattatgactcttctttcatctttg
ttaacttatcctcaggtccaacaatgcagtattcagcagtcactcacagttttagttcca
cgtgtctggccttttttgcatcacactatatcatcagttcgaagagcagcattggaaact
ctgtttacgttattgtcaacacaggaccagaattcttcatcttggcttatacctatcctg
cctgatatgcttcggcatatttttcagttctgtgttttagaaagcagccaggaaattctg
gatctcattcacaaggtttggatggaactcttgagcaaggcatcagttcagtatgtggta
gcagctgcttgcccatggatgggtgcttggctttgcttaatgatgcagccttctcactta
cctattgatttaaatatgttactagaagtaaaagctagagccaaggaaaaaacaggtggt
aaggtacgccaaggccaaagtcaaagtaaagaagtacttcaggagtatattgcaggtgca
gacaccatcatggaagacccagccaccagggattttgtggttatgcgggccagaatgatg
gcagctaaattgttaggagcactttgttgctgtatttgtgatccaggtgtaaatatggta
actcaagaaattaaaccagctgaatcccttggccagttactactcttccatctcaactcc
aaatctgccttacaaagaattagtgttgctttggtaatctgtgaatgggctgctttacaa
aaggaatgtaaagctgttaccctagctgtgcagccacgtttacttgatatcctttcagaa
catttatattatgatgaaattgctgttccattcacacgaatgcagaatgaatgtaaacag
cttatatcatcattagctgatgcacatattgaagttggtaatagagtaaacaacaatgtt
ttaacaatagatcaagctaatgacctggtcactactgtttttaatgaagtcacatcaact
ttcgatttaaattctcaagtattacagcaattagatagtaaacgacagcaggtccaaatg
acagttacagagacaaatcaagagtggcaagtgttgcagttgagagtgcatacttttgct
gcatgtgcagttgtgagcttgcagcagcttccggagaaattaaatcctatcataaaacca
ctaatggagacaattaaaaaagaagagaatacactagtgcaaaactatgcagctcagtgc
atagctaaacttcttcagcaatgtacaacaaggacaccctgtcccaattcaaagatcatt
aaaaacctctgtagctcactttgtgtggacccatatctaactccttgtgtaacatgtcca
gtaccaacacaaagtggccaggaaaattctaaaggacccagctcagaaaaagatgggatg
caccatactgtaacgaagcatagaggtataattacactctataggcatcagaaagctgct
tttgctatcacaagtaggcgaggtcctacccccaaagcagtaaaagctcaaatagcagat
cttcctgcaggaagtagtgggaatatccttattgaacttgacgaggcccaaaagccttac
ctggtacaacggagaggagctgaatttgccttgacaactatagtgaagcattttggtggt
gaaatggcagtgaagttgccacatctctgggatgctatggttggcccactgaagaatata
attgatctaaataattttgatggaaagtccctcctggaaaggggagatggacctgctcaa
gaattggtgaattctctgcaagtttttgaaacagcagcagcttcaatggattccgaactt
catcccttgttggtacagcatttgtctcatctttatatgtgccttcaataccccagcact
gcagtgaggcacatggctgctcgttgtgtaggtgtcatgagcaaaatagccaccatggaa
acaatgaacatttttttggaaaaggtacttccatggctgggagcaattgatgacaatgtc
aaacaagagggtgcaattgaagcacttgcctgtgtaatggaacaactagatgttggtatt
gttccatatattgtccttttagttgttcctgtgttgggaagaatgagtgatcagacagac
agtgtaagattcatggctacacaatgctttgcaacattaattagactcatgccacttgag
gcaggcattccagaccctccaaacatgtcagaagaattaatccaattgaaagcaaaagag
cgacactttttggaacagctgttagatgggaaaaagttagaaaattataaaattccagta
ccaatcaatgctgaactaagaaaatatcagcaggatggtgtgaactggttagcatttctt
aataaatataaattgcatggaattctgtgtgatgacatgggtttaggaaaaactttacag
tccatctgcattctagcaggagatcattgtcacagggcccaggaatacgcaagatcaaaa
ttggcagaatgtatgccacttccttccttggtggtttgtccaccaacattaacaggtcac
tgggtggatgaagtaggtaaattttgctccagagagtatctcaatcccttgcactatact
ggacctcccactgaacgaataaggttacagcatcaagtaaaaaggcataatctgatagtg
gcttcatatgatgttgtgaggaatgacatagatttttttagaaatattaaatttaactac
tgtattcttgatgaaggccatgtcatcaaaaatggaaaaacaaaattgtcaaaagcagta
aaacaactgactgctaattataggattattctttctggaaccccaatccagaacaatgtt
ttggagctgtggtcgttgttcgatttcctcatgccaggatttttgggtactgaacgccag
tttgctgctcgatatggtaaacctatattagcaagtagagatgctcgaagttccagtcga
gaacaagaagcaggtgttcttgcgatggatgcgctgcatcgccaagtcctgccgtttctt
ttgagaagaatgaaagaagatgttttacaggatcttccacctaaaattattcaagattat
tattgtactcttagtcctctccaggttcagctctatgaagattttgccaaatctcgtgcc
aagtgtgatgttgatgaaacagtttcttcagctgcactttctgaagaaactgaaaaacca
aagcttaaagctacaggccatgtattccaggcattacaatacttacgtaaactgtgcaac
catccagcattagtcttaacacctcaacatccagagttcaagagcactactngaaaactg
gcagttcagaattcttctcttcatgatattcaacatgctcctaaactctcagctttgaaa
caattgctgttggactgtggtttgggaaatggcagcacttcagagagtggcacagagtct
gttgtggcccagcacaggatactgatcttctgtcagcttaaaagtatgcttgatatagta
gaacatgacctgctgaaacctcacctgccctctgtcacttatttgagattagatggcagc
atacctcctggtcagagacattccattgtttcccggtttaacactgatccatccatagat
gttctcttacttacaactcatgttggtggcctggggcttaacttgacaggcgctgataca
gtagtatttgtggagcatgactggaatcccatgcgagatctacaagctatggaccgggcc
catcgcattgggcagaaacgcgtagttaatgtttaccgattaataaccagaggaacattg
gaagagaaaataatgggtttgcagaaattcaagatgaacatagctaataccgttattagc
caagagaattctagtttgcagagtatgggaactgatcaacttcttgatctctttactctt
gataaggatggcaaagcagaaaaagctgatacctcaacttctggtaaagcaagtatgaaa
tcaattcttgaaaacctgagtgatctttgggatcaagagcaatatgattcagaatacagc
cttgaaaattttatgcattctctcaagtaa
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integrated database retrieval system
