KEGG   Sciurus carolinensis (gray squirrel): 124984737
Entry
124984737         CDS       T08117                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
ncar  Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ncar03036]
    124984737
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124984737
Chromosome and associated proteins [BR:ncar03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    124984737
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     124984737
SSDB
Motif
Pfam: MMS19_C MMS19_N INTS7_N TOR1L1_N HEAT_2 HEAT PDS5 HEAT_EZ
Other DBs
NCBI-GeneID: 124984737
NCBI-ProteinID: XP_047408685
LinkDB
Position
5:complement(146315148..146344788)
AA seq 1066 aa
MAAAAALEAAASPTGALWGLVQDFVMGQQEGPADQVAADVKSGSYTVLQVVEALGSSLEN
PEPRTRARGIQLLSQVLLQCHSLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLRALSLC
VALPPGLAVSVLKAIFQEVHVQSLLQVDRHTVYSIITNFMRTREEELKGLGADFTFGFIQ
VMDGEKDPRNLLVAFRIVHDLISKDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRE
DLILSLRAVLASTPRFAEFLLPLLIEKVDSEILSAKLDSLQTLNACCAVYGQKELKDFLP
SLWASIRREVFQTASERVETEGLAALLSLTACLSRSVLRADAEDLLDSFLSNILQDCRHH
LCEPDMKLVWPSAKLLQAAAGASARACDHITSSVLPLLLDQFHKHSQSNQRRTILEMILG
FLKLQQKWSYEDKDENPLSGFKDQLCSLVFMALTDPSIQPQLVGIRTLTVLGTQPGLLST
GDLELAVGHLYRLSFLEEDSQSWEGGLCVWLWLLTGWRDVGLLSLFLGIKKPCPTQWCRV
AALEASGALAALYPVAFISHLIPKLAEELRREESDLARGDEPTKCSRHLRCLQALSAVST
HPSIVKETLPLLLQHLWQANKGNVVAGSTEVIAICQSLQRVAEKCQQDLESYWYFHETAV
PCLLALAVQASMPEKEPSVLRKVLLEDEALAAMVSVIGTATTHLSPELAAQSVTHIVPLF
LDGNTSFLPENSFPSRFQPFQDGSSGQRRLIALLMAFVCSLPRNVEIPQLNQLMRELLEL
SCCHGCTFSSTAAAKCFAGLLNKHPAGQQLDEFLQLAVDTVENGLGSKASRSQAFTLLLW
VTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMF
RQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSC
PDSVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTHL
PTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLLGSPGS
NT seq 3201 nt   +upstreamnt  +downstreamnt
atggctgccgccgccgctctggaggcggcggcgtcgcctacgggcgccctgtggggcctc
gtgcaagacttcgtcatgggtcagcaggagggtcccgctgaccaggtggctgcagatgtg
aaatctggcagctatacagtgttacaagtggtggaagcccttggatcctctctagagaat
ccagaaccccgaactcgggcacgagggatccaacttttgtcacaggtgctactccagtgc
cactcattgctcctggaaaaggaagtggtacatctgatcctgttctatgagaaccgactg
aaggaccatcatcttgtgatcccttctgtcctgcagggtttgagggcacttagcctgtgt
gtggccctgcctcctgggctcgctgtgtctgtgcttaaagccatcttccaggaagtacat
gtacagtccctgctccaggtagaccgacacacagtctacagtatcatcaccaacttcatg
cgaacccgggaagaagagctaaagggcctaggagctgacttcacatttggcttcatccag
gtgatggatggggaaaaggatccccgtaatcttctggtggctttccgcatcgtccatgat
ctcatttccaaggactatagcctgggaccctttgtagaagagttatttgaagtgacatcc
tgttatttccctattgattttactcctccacctaatgatccccatggtatccagagagaa
gatctgatcctcagtcttcgagctgtgctggcttctacaccacgatttgcagaattccta
ctgcccctgctgattgagaaagtagattccgaaattctgagtgccaagctggattctctg
cagactctgaatgcttgctgtgctgtgtatggacagaaagaactgaaggacttccttccc
agcctttgggcttctatccgtagagaggtgttccagacggccagcgagcgggtggagaca
gaaggcctggcagccctcctctccctgacagcgtgtttgtctcgctctgtgctgagggct
gatgctgaggacctccttgactccttccttagcaacattctacaggactgcaggcaccat
ctgtgtgaaccagatatgaaactggtgtggcctagtgccaagctgttgcaggcagctgca
ggtgcatctgctcgggcctgtgaccacatcaccagcagcgtgctgcctctactgttggat
cagttccacaagcatagtcagagcaaccagcggcggacaatccttgaaatgatcctgggt
ttcttgaaactgcagcagaaatggagctatgaggacaaagatgaaaaccctctgagtggc
tttaaggaccagctttgctcactggtgttcatggccttaacagatcccagcattcagcct
caacttgttggcatccgtacactgacagtgttgggtacccagccaggtctcctatctact
ggggacttggagctggcggtgggtcacctgtacaggctgagcttcctggaggaggattcc
cagagttgggaaggtgggctctgtgtttggctctggctgctaaccggttggagagatgtg
ggactgctctctcttttcttgggcattaagaagccctgtccaactcagtggtgtagggtg
gcagcactggaagcttcaggagccctagctgctctctaccctgtggccttcatcagccac
ctgatacccaagcttgctgaagaactgcgcagagaggagtcagatttggctagaggggat
gagcctaccaaatgctcccggcatttgcgctgtctgcaagctttgtcagctgtttcaaca
catcccagcattgtcaaggagactctgcctttgctgctgcagcatctctggcaggctaac
aaagggaatgtggttgcaggatccactgaagttattgctatctgccagagtctccagcgg
gtggcagaaaaatgccagcaggacctggagagctactggtatttccatgaaaccgctgta
ccctgcctgcttgctttggctgtgcaggcttccatgccagagaaagaaccctcagttctc
agaaaagtgctgttggaagatgaggccttggctgccatggtgtctgtcattggcaccgcc
accacccacctgagccctgagttagctgcccagagtgtcacccacattgtgcctctcttc
ttggatggcaacacctcctttctgcctgaaaacagcttcccaagcagattccagccgttc
caggatggctcctcagggcagaggcggctgattgcactgcttatggcctttgtctgctcc
ctgccacgaaatgtggaaatccctcagctgaaccaactcatgagggagcttttggagctg
agctgctgccatggctgcaccttctcctccactgctgctgccaagtgttttgcaggactc
ctcaataaacatcctgcagggcagcagctggatgaattcctccagctggctgtggacaca
gtagaaaatggcctgggctccaaggcttcccggagtcaggccttcacattactgctctgg
gtaacaaaggcccttgtactcagataccatcctctcagttcctgccttactgcccggctc
atgggcctcctgagtgacccagaactaggcccagcagcagctgatggcttttcactgctc
atgtctgactgtactgatgtgctgactcgagctggccatgctgaagtacggatcatgttc
cgtcaacgtttcttcacagataatgtgcctgctttggtccaaggcttccatgccgctcct
caagatgtgaagccaaactacctgaagggtctgtctcacgtactcaatagattgcccaaa
cctgtgcttttgccagagctgcccacacttctttccttgctgttggaggccctatcatgc
cctgactctgtggttcagctgtccaccctcagctgtcttcagcctcttctactggaagca
ccccaagtcatgagtcttcacgttgataccctggtcaccaagtttctgaacctcagttcc
agtccttccatggctgtccggattgctgcgctgcagtgtatgcatgctctcactcacctg
cccactcctgtgctgctgccatataaaccacaggtgatccgggcattagccaaacccctg
gatgataagaagagactagtgcgaaaggaagctgtgtcagccaggggagaatggtttctg
ctgggaagccctggcagctga

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