Sciurus carolinensis (gray squirrel): 124984835
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Entry
124984835 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124984835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124984835
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124984835
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
124984835
NCBI-ProteinID:
XP_047408856
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All DBs
Position
5:complement(67013360..67039812)
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AA seq
958 aa
AA seq
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MLKSKTFLXKTRAGGVMKIVREHYLRDDIGCGAPGCTACGGAHGGPALEPRPQDPASSLW
PRPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHF
YTFTNEHHKETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSAENQLQVIFITNDRKN
KEKAVEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGKEIESGKIIFSEHLPLSKLQQG
IKSGIYLQGTFRASRENYLEATVWIHGDTEENKEIILQGLKHLNRAVHEDIVAVELFPKS
QWVAPSSVVLQDEGQNEDDVEKDEERECMLKTAVNEKMLKPTGRVVGIIKRNWRPYCGML
SKSDIKESRRHLFTPADRRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVKNL
GDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKNREDLRHLCVCSVDP
PGCTDIDDALHCRELKNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMV
PELLSSNLCSLRCNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSA
TMNDDITISLRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETN
SMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSSYEILVKAAKSKNLDIKTDTAKS
LAESLDRAESPAFPYLNTLLRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIR
RYADIIVHRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFF
KSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPHLIYDDEIPSLQIEGIV
FHVFDKVKVKIMLDSSNLQHQKIRMALVEPQIPGISIPTEPSNADLNEPGRKKRKYEK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaatccaagacgttcttgnaaaagacccgggcgggcggcgttatgaagattgtt
cgcgagcactacctgcgggatgacataggctgcggagcgccggggtgcacggcttgcggt
ggggctcacggggggccggctttggagccacggccccaggacccagcgagcagcctctgg
ccgcggccgcactacttgctgcctgacaccaacgtgttactgcatcagattgatgttctc
gaggaccctgccatcaggaatgtaattgtactacaaacggttctccaagaagtgagaaat
cgaagtgctcctgtatataaaagaatccgggatgtgaccaataaccaggagaagcatttt
tatacattcactaatgagcatcataaagaaacctatgtagaacaagaacagggagaaaat
gctaatgatagaaatgacagagccattcgagtagcagcaaaatggtacaatgaacatttg
aagaaaatgtcagcagaaaatcaactacaagttatctttataaccaatgacaggaaaaac
aaagagaaagctgttgaagaaggaataccagctttcacatgtgaagaatatgtaaagagc
ctcactgctaatcctgaactcatagatcgtcttgcttgtttgtctgaagaagggaaagaa
atagaaagtgggaaaattatattttcagagcatcttcccctaagtaagcttcaacaaggc
ataaaatctggtatataccttcaaggaacatttagagctagccgagaaaattacttagaa
gctactgtatggattcatggagacactgaagaaaataaagagataatcttacaaggactt
aaacatttaaatcgagctgttcatgaagatattgtagctgttgagctttttcctaagagt
cagtgggtggcaccatcttctgttgttttacaagatgaagggcaaaatgaagatgatgtg
gagaaagatgaggagagagaatgcatgcttaagactgctgtaaatgaaaaaatgttaaag
cctacaggtagagttgtaggaataataaaaaggaattggagaccatattgtggcatgctt
tccaagtctgatatcaaggagtctagaagacatctcttcacacctgctgataggagaatc
cctcgaattcggatagaaacaagacaggcttctacattagaaggacggagaattattgtt
gctattgatggctggcccagaaattccagatatccaaatggacactttgtaaaaaactta
ggtgatgttggagagaaggagacagaaacagaagttttgttacttgagcatgatgttcct
catcagcccttttcacaggctgttcttagctttctgccaaagatgccctggagcattact
gaaaaagatatgaaaaaccgggaagacctgaggcatctgtgtgtgtgtagtgtggaccca
ccaggatgtactgatatagatgatgctctacattgtagagaactcaaaaatggaaacttg
gaggttggtgttcatattgctgatgttagccattttattaggccaggaaatgccttagat
caagaatcagccagaagaggaacaactgtgtatctttgtgaaaagaggattgacatggtt
ccagagttgcttagctctaacttatgttccttaaggtgtaatgttgacaggctggcattt
tcatgtatttgggaaatgaatcacaatgctgaaatcttaaaaacgagatttaccaaaagt
gtaattaattcaaaggcttctcttacatatgctgaagctcagatgagaattgattcagca
accatgaatgatgatattaccattagtctccgtggactaaataaattagctaaaattctg
aaaaaaagaagaattgaaaaaggggctttgactctttcgtccccagaagttcgattccac
atggacagtgaaactcatgatcctatagacctgcaaaccaaggaacttagagaaacaaat
tccatggtggaagaatttatgttacttgctaatatctctgttgcaaaaaaaattcatgaa
gaattttctgaacatgctctacttcgaaaacatcctgctccacctccatcaagttatgaa
attcttgttaaggcagctaaatccaagaatttggatattaagactgatacagccaagtct
ttggctgaatctttggaccgggccgaatctcctgctttcccatatctaaacactttgttg
agaatattagccactcgctgtatgatgcaagctgtatacttctgttctggaatggataat
gattttcatcactatggtttagcatccccaatatacacacattttacttctcccatcaga
aggtatgcagatatcattgttcatcggctgctggctgtggctattggggctgattgtact
tatccagagttgacagataaacacaaacttgccgatatatgtaaaaatcttaatttccgg
cacaaaatggctcagtatgctcaacgtgcgtcagtggctttccatacccagttatttttc
aaaagcaaaggaatagtaagtgaagaagcctatattctatttgtaagaaagaatgctatt
gtggtattaattccaaagtatggtttagaaggtacagttttttttgaagaaaaggacaaa
ccaaagccacatcttatttatgatgatgagataccatcacttcaaatagaaggtatagtg
ttccatgtgtttgataaagttaaagtgaagatcatgttagactcatctaatcttcagcat
cagaaaatccgaatggccctggtagaaccacagatacctggaataagcattcctactgag
ccttcaaatgcagaccttaatgaaccagggagaaagaagaggaaatatgaaaaatag
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