KEGG   Sciurus carolinensis (gray squirrel): 124985136
Entry
124985136         CDS       T08117                                 
Name
(RefSeq) cullin-4A isoform X1
  KO
K10609  cullin 4
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03420  Nucleotide excision repair
ncar04120  Ubiquitin mediated proteolysis
ncar05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124985136
  09124 Replication and repair
   03420 Nucleotide excision repair
    124985136
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    124985136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ncar04121]
    124985136
   03400 DNA repair and recombination proteins [BR:ncar03400]
    124985136
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncar04147]
    124985136
Ubiquitin system [BR:ncar04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     124985136
DNA repair and recombination proteins [BR:ncar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      124985136
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      124985136
Exosome [BR:ncar04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   124985136
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 124985136
NCBI-ProteinID: XP_047409506
LinkDB
Position
5:complement(821111..853959)
AA seq 759 aa
MADEGPRKGSVSALVGRTNGLTKPAALASGPAKPGGAGGSRKLVIKNFRDRPRLPDNYTQ
DTWRKLHEAVRAIQGSTSIRYNLEELYQAVENLCSHKASATLYKQLRQVCEDHVQAQILP
FREDALDSLVFLKKINACWQDHCRQMIMVRGIFLFLDRTYVLQNSLLPSIWDMGLELFRN
HIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETN
CLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLT
AILQKGLDHLLDENRVPDLTQMYQLFSRVKGGQQALLQHWSEYIKTFGTAIVINPEKDKD
MVQDLLEFKDRVDHVVEVCFQRNERFVNLMKESFEAFINRRPNKPAELIAKHVDSKLRAG
NKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLK
HECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSAPGPIDLTVNILTMGYWPTYTPME
VHLPPEMVRLQEVFKTFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLL
MFNEGDGFSFEEIKVATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFLFNAEF
KHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELY
NQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA
NT seq 2280 nt   +upstreamnt  +downstreamnt
atggcggacgagggcccgcggaagggcagcgtctcggcgctcgtgggccgcaccaacggc
ctcaccaagccggcggcgctggccagcggccccgccaagccggggggcgcgggcggctcc
aggaagctggtcatcaagaacttccgagacaggccgcggctgccggacaactacacccag
gacacgtggcggaagctgcacgaagcggtcagggccatccagggcagcacgtccatcagg
tacaacctggaggagctgtaccaggccgtggagaatctctgctctcacaaagcctctgcc
acgctctacaagcagctgcgccaggtctgcgaggaccacgtccaggctcagatccttcca
tttagagaagatgcgctcgacagcctcgtgttcctgaagaagatcaacgcctgctggcag
gatcactgcagacagatgatcatggtcagaggcatcttcctgttcttggaccgcacctac
gtcctgcagaactccctgctgccctccatctgggacatgggattggagcttttcagaaac
cacatcatcagtgacaagatggttcagagtaagaccatcgacgggatcctcctactgatc
gaacgggagcgcagtggtgaagccgtggacaggagcctgctgcgcagcctgctgggcatg
ctctcagaccttcaggtgtacaaagattcgtttgagctgaaatttttggaagaaactaat
tgtttatatgctgcagaaggccaaagattaatgcaagagagagaggtccccgagtacctt
aaccacgtgagtaaacgtctggaggaggagggagaccgcgtgatcacatacctggaccac
agcacacagaaaccactgatagcctgtgtggagaagcagctgctgggagaacacttgaca
gcgattctgcagaaaggacttgaccacctgctggatgagaacagagtgcccgacctcacg
cagatgtaccagctgttcagccgggtgaagggcgggcagcaggcactgctgcagcactgg
agcgagtacatcaagactttcgggacagcgattgtcatcaaccctgagaaggacaaagac
atggtgcaggacctgctggagttcaaggacagagtggaccacgtggtggaggtgtgcttc
cagaggaatgagcgcttcgtcaacttgatgaaggagtcctttgaggccttcatcaacagg
aggcccaacaagcccgctgagctcatcgctaagcacgtggactcaaagctacgggcaggt
aacaaggaagccacagatgaggagctggagaggatcctggacaagatcatgatactcttc
aggttcatccacggcaaagatgtctttgaagcgttttataagaaagatttggcaaaaaga
ctcctcgttggaaaaagtgcctcagttgatgccgaaaagtcgatgctatcgaagctcaag
catgagtgcggggctgccttcaccagcaagctggagggcatgttcaaggacatggagctt
tccaaggacatcatggtgcacttcaagcagcacatgcagaaccagagtgccccgggcccc
atcgacctcacagtgaacatcctcaccatggggtactggcccacctacacgcccatggaa
gtgcacctgcctccggagatggtccgcctccaggaggtgttcaagaccttctacctgggc
aagcacagtggccggaagctccagtggcagaccaccctggggcacgctgtcttaaaggcg
gagtttaaggaggggaagaaggagttccaggtgtccctcttccagacgttggtgctgctc
atgttcaatgagggagacggattcagctttgaggagataaaagtggccaccgggatagag
gacagtgaactgagaagaactctgcagtccctggcctgtggcaaagcgcgtgttctgatc
aaaagccccaaaggaaaggaggtggaagatggagacaaattcctcttcaacgcagaattc
aagcacaagctgtttagaataaagatcaaccagatccagatgaaggaaaccgttgaagaa
caagtcagcactactgagagagtgtttcaggatagacaatatcagattgatgctgctata
gtcagaatcatgaagatgaggaagactcttggtcacaatcttctagtttctgagctgtat
aaccagctgaagtttccagtcaagcctggagacctgaagaagagaattgaatctctgata
gacagagactacatggagcgagacaaggacagtcccaaccagtaccactacgtggcctga

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