Sciurus carolinensis (gray squirrel): 124985205
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Entry
124985205 CDS
T08117
Name
(RefSeq) protocadherin-8 isoform X1
KO
K16499
protocadherin delta 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124985205
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124985205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
124985205
NCBI-ProteinID:
XP_047409674
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All DBs
Position
5:complement(48163894..48168149)
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AA seq
1070 aa
AA seq
DB search
MSSVRRWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGTVIGTLAEDLHMKVSGD
TSFRLMKQFNSSLLRVREGDGQLTVGDAGLDRERLCGQAPQCVLAFDVVSFSQEQYRLVH
VEVEVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVGANGLQSVRLAEPHSP
FRVELQTRADGAQCADLVLLQELDRESQAAYSLELVAQDGGRPPRSATAALSVRVLDAND
HSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGDVVFSFGARTPPEARRLFRLD
PRSGRLTLAGPVDYERQDTYELDVRAQDRGPGPRAATCKVIVRIRDVNDNAPDIAITPLA
APGAPAASPFAAAAAAAALGGTDATSSAGSGTQETGATSLVPEGAARESLVALVSTSDRD
SGANGQVRCALYGHEHFRLQPAYAGSYLVVTAASLDRERIAEYNLTLVAEDRGAPPLRTV
RPYTVRVGDENDNAPLFTRPVYEVSVRENNPPGAYLATVAARDPDLGRNGQVTYRLLEAE
VGRSGGAVSTYVSVDPATGAIYALRSFDYETLHQLDVRIQASDGGSPQLSSSALVQVRVL
DQNDHAPVLVHPAPANGSLEVAVPGRTSKDTAVARVQARDADEGANGELAFDLQQQEPRE
VFAIGRRTGEIVLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRGPVV
PASVGSPEHSRPPGSRLEASGPALQWDTPLIVIIVLAGSCTLLLAAIIAIATTCNRRKKE
VRKGGPLREERPGAAGGGASAPGSPEETTRGAGPRPNMFDVLTFPGSGKAPFGSPAADAP
PPAVAAAEVPGSEGGSATGESSCHFEGQQRLRGAHAEPYGASPGFGKEPAPPVAVWKGHS
FNTISGREAEKFSGKDSGKGDSDFNDSDSDISGDALKKDLINHMQSGLWACTAECKILGH
SDRCWSPSCGGPNSHPPPHPPAQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEK
VLHRDYDRTVTLLSPPRPGRLPDLQEIGVPLYQSPPGRYLSPKKGANENV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgagttctgtgaggcgctggggcagcccttgccttttccccctgcagctcttcagcctc
tgctgggtgctttcagtggcccagagcaagacagtccgatacagcaccttcgaagaagat
gcccccggcacggtcatcgggaccctagctgaggacctgcatatgaaagtatctggagac
acaagcttccgcctgatgaagcaattcaacagctctctgcttcgggtgcgcgagggtgac
gggcagctgaccgtcggggacgcaggcctggaccgtgaacgactatgtggccaggctcct
cagtgtgtgctggcgttcgacgtggtcagcttctcacaggagcaataccgactggtgcac
gtggaggtggaggtgagggacgtcaacgaccatgcgccgcgcttccccagggcccagatt
ccggtggaggtgtccgagggtgcggcggtgggcacgcgcatccccctggaggtgccggtg
gacgaggatgtaggtgccaatgggctgcagagtgtgcgcctagctgagcctcacagccca
ttccgagtggagctgcagacgcgcgcggacggcgcccagtgcgcagatctggtgctgttg
caggagctggaccgcgaaagccaggccgcttacagcctggagttagtggcccaggacggc
ggccgcccgccgcgctctgccaccgcagctctcagcgtgcgtgtgctggacgccaacgac
cacagcccggccttccctcagggcgccgtggccgaggtggaattggcggaggatgctccc
gtgggctcgttgttgctggacctggacgcggcggaccccgacgagggccccaacggcgac
gtggtgttctccttcggtgctcgaaccccacccgaagctcgccgcctcttccggctggac
ccgcgctcgggtcgactcaccctggcgggtcccgtagactacgaacgacaggacacctac
gagctggacgtgcgggcgcaggaccgcggccctggtccccgggccgccacctgcaaggtc
atcgtgcgcatccgcgacgtcaacgacaacgctccagacatcgctatcaccccgcttgcc
gccccgggagctccagccgcctcgcccttcgccgccgccgccgccgccgccgcactcggg
gggacggacgcgacctcgtcggctgggtcggggactcaggagaccggcgccacctctttg
gtgcctgagggggcggcacgggagagcctggtggcgctggtcagcacctcggacagggac
tcgggcgccaatgggcaggtacgctgcgccctctatgggcacgagcactttcgattgcag
ccggcctacgcaggcagctacctggtggtgaccgcagcttcactggaccgagagcgcatc
gccgagtacaatctgacgctggtggccgaggaccgtggcgcgcccccgctgcgcactgtg
aggccctacactgtgcgtgtgggcgacgagaacgacaacgcgccactcttcacgcggcca
gtctatgaggtgtcggtgcgcgaaaacaacccccctggagcctacctggccaccgtggct
gcccgggatccggatttgggccgcaacggccaggtcacctaccggctgctagaggctgaa
gtgggccgctccggaggcgctgtgtctacctacgtctcagtggacccggctacaggagcc
atctacgcgctgcgcagcttcgactatgagactctgcaccagctcgacgtgcgcatccaa
gctagcgacggcggctcccctcagctttccagcagcgctcttgtgcaagtgcgggtgctg
gaccagaacgaccatgcgccggtcctggtgcacccagcgcctgcaaacggctctctagaa
gttgcggtccccgggcgcacatctaaggacacggctgtggcgcgcgtgcaggcccgggat
gctgatgagggcgccaacggggagctggcttttgacctacagcagcaggagccgcgcgaa
gtcttcgccatcggtcgccgcacgggggagatcgtgctcaccggagacctctcgcaagag
cctccgggccgcgtgtttagggcgctgctggtcatatccgacggcggccgcccacctctc
accaccaccgcaactgtcagcttcgtggtaacagcaggtggtggacgcgggccggttgtg
cctgccagtgtagggagcccagagcactcccgcccgcctggctctcggcttgaggcgtcc
gggccggcgctgcaatgggacacgccgctgattgtcatcatcgtgttggccgggagctgc
acgctactgctggccgccatcatcgccatcgctaccacttgcaaccgccgcaagaaggag
gtgcgcaaaggggggcccctccgggaagagcggcccggggcggcgggcggcggagcctcg
gctcccggctccccggaggagaccacccggggagctgggcccaggcccaacatgttcgac
gtgctcaccttccctggcagcggcaaagcgccctttggcagccccgcggccgacgcgccc
ccgcccgcggtcgccgcggccgaagtgccgggctcggagggcggcagcgccactggggaa
agctcctgtcacttcgaggggcagcagcggctccgcggcgcgcacgccgagccctacggt
gcctccccgggcttcggaaaggagccggcgccccctgtggcggtctggaagggacactca
ttcaacactatctcgggccgagaagcggagaagttcagcggcaaagacagcggcaaaggg
gacagtgatttcaacgacagcgattctgacatcagcggggacgctcttaaaaaggatctc
atcaaccacatgcagagcggactgtgggcatgcactgctgagtgtaagatcctcggccac
tctgaccgttgctggagcccatcctgtggagggcccaactcgcatcccccacctcatcca
ccagcccagatgtcaaccttctgtaagagcacgtccctgcctcgggatcctctgcgcagg
gacaattactaccaggcccagctgcccaagacagtagggctgcagagcgtctatgagaaa
gtgctgcacagagactatgataggacagtcactctcctctcccctccacgtccagggagg
ctcccagatcttcaggagattggggtgcccctctaccagtcccctcctggaagatacctg
tctccaaagaagggagccaatgaaaatgtgtaa
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