Sciurus carolinensis (gray squirrel): 124985278
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Entry
124985278 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124985278
03015 mRNA surveillance pathway
124985278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124985278
03041 Spliceosome [BR:
ncar03041
]
124985278
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124985278
Spliceosome [BR:
ncar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
124985278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
124985278
NCBI-ProteinID:
XP_047409850
LinkDB
All DBs
Position
1:complement(191842854..191870739)
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AA seq
872 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRTKSRES
FPAPEKKXKTPELPEPSVESKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKE
KERLDQDLGPRSKSRSLTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPR
RMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSP
SASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSVTKHKGTEKRESPS
PAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDEQPKRSHV
KNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPXRRRRSPSPAPPPRRRRS
PTPPPRRRTPSPPPRRRSPSPRRYSPPIQREYSPSPPPKRRTASPPPPPKRRASPSPPPK
RRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSAREARSPQPNKRHSPSPRPRAPQ
TSSSPPPVRRGASASPQRRQSPSPSTRPIRRVSRTPEPKKTKKAASPSPQSVRRVSSSRS
VSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDQEGGGKKKK
KKKDKKHKKDKKHKKHKKHKKEKAMAAAAAVPVTPAAVAAATTTSAQEEPEAAPEPKKET
ESEAEDNLDDLEKHLREKALRSMRKAQVSPQS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggaacaagtgcagaacaggataatcggttcagcaacaaa
cagaagaaactactgaagcagctgaaatttgcagaatgcctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaacgagtaacagaaatcctt
ggatttgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaatcca
gactccaaaatgatgcaaatcaacctcactgggtttttgaatgggaaaaatgctagagaa
tttatgggagaactttggcctctactgttaagcgcacaagaaaacatcgctggaatccct
tctgctttcctagaacttaagaaagaagaaataaaacagagacagattgaacaagaaaaa
ttggcatctatgaagaaacaagatgaagacaaagataagagagataaggaagaaaaagag
agcagcagagaaaaaagagagaggtctcgaagcccaagaagaaccaagagccgggagtcc
tttcctgctccagaaaagaagngaaaaactccagagctcccagaaccttcagtggaaagt
aaagaaccttcagtacaagaggccacatctacaagtgacatcctgaaagttcccaagcct
gaacctataccagagcctaaagaaccttctccagaaaaaaattccaaaaaagaaaaggag
aaggaaagactcgaccaagatctcggtccacgttccaaatcaagatcactgacgcgttct
cggtctccttctcacacgcgaccaagacggcgccataggtcccgatcaagatcatattca
cctagaaggcggccaagcccaagaaggcggccatctcctcgaagaagaactccgccaaga
cgaatgcctcctccaccaaggcacagaaggagtagatctccagtgagacgaagaaggcgt
tcatcagcatccttgtctgggagtagctcatcatcctcttcatctcgttcccgatcccca
ccaaagaagcctcccaagaggacatctagcccccctcgaaaaactcgtaggttatctcct
tcagcgagtcctcctcggagaagacacaggccatcacctccagcaactccaccaccaaaa
actcgtcattccccaacaccccagcagtcaaatcgtacaagaaaaagtcgtgtgtctgtg
tccccagggagaacttcagtgacaaaacataaaggtactgagaaaagagagtcaccttca
ccagcaccaaagcctagaaaagtagagttatctgaatcagaagaagataaaggtggcaaa
atggctgcagcagattctgtgcagcagagacgccaatacagacgacagaaccagcagtct
tcttctgactctggctcctcctcctcctcagaagatgagcaacccaagagatcccacgta
aagaatggtgaggtaggcaggcggcggagacattccccttctcggagtgcctctccttca
ccacgaaagcgccagaaagagacttcccctcgtggtagacggaggagaagtccctcccca
ccacccnccagaaggcgacgctctccttctcctgctcctcctcctcggcggcgcagatct
cccacaccaccaccacggcgaaggactccttctcctccccctcgtcggcgctcaccttcc
ccaagaagatactctcctccaatacagagagaatactctccttctccgcctccaaagaga
agaacagcctcccccccaccccctcctaaacgacgggcatctccatctccaccaccaaag
cgccgggtctcccattctcctcctcccaaacagaggagctccccagttaccaagagacga
tcaccttctttatcatcaaagcataggaaaggatcttctccaagccgctctgcccgggag
gcccggtcaccacaaccaaacaaacggcattctccctcaccacggcctcgagctcctcag
acatcctcaagtcctccacctgttcgacgaggagcatcagcgtcaccccaaagaaggcag
tccccatctccaagtactaggcccattaggagagtctccaggactccagaacctaaaaag
acaaaaaaggctgcctcaccaagcccacagtccgtaagaagggtctcatcctcccgatct
gtctctggatctcctgagccagcagctaaaaagcccccagcacctccatccccagtccag
tctcagtcaccctcaactaactggtcaccagcggtaccggtcaaaaaggctaaaagccca
acaccaagcccatcaccggccaggaattcagatcaagaaggaggcggaaagaaaaagaag
aaaaagaaggacaagaaacacaaaaaggataagaaacacaagaagcacaaaaaacacaag
aaggaaaaggctatggccgcagcggctgcagtgcctgtgacccctgcagccgttgctgct
gccacaactacatcagcacaggaggaacctgaggcagcaccagagccgaagaaggagact
gaaagcgaagctgaagacaaccttgatgacttagaaaagcacctgcgagaaaaagccctg
agatccatgcggaaggctcaagtgtcccctcagtcttag
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