Sciurus carolinensis (gray squirrel): 124985294
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Entry
124985294 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124985294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124985294
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124985294
mRNA degradation factors
5'-3' decay
Lsm complex
124985294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF658
Motif
Other DBs
NCBI-GeneID:
124985294
NCBI-ProteinID:
XP_047409861
LinkDB
All DBs
Position
5:125369153..125369638
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDINKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEELKVQALKDP
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactatatgcccggcaccgccagcctcatcgaggacatcaacaaaaagcacttggtc
ctacttcgagatggaaggacacttataggctttttaagaagtattgatcaatttgctaac
ttagtgctacatcagactgtggagcgtattcatgtgggcaaaaaatatggtgatattcct
cgaggaatttttgtggtcagaggagaaaatgtggtcttactaggagaaatagacttggaa
aaggagagtgatacacccctccagcaagtgtctattgaagaaatcttagaagaacagagg
gtggaacaacagaccaagctagaagcagaggagctgaaagttcaggcccttaaagatccg
ggtctgtcaattcctagagcagatactcttgatgagtattaa
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