Sciurus carolinensis (gray squirrel): 124985379
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Entry
124985379 CDS
T08117
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04010
MAPK signaling pathway
ncar04064
NF-kappa B signaling pathway
ncar04380
Osteoclast differentiation
ncar04625
C-type lectin receptor signaling pathway
ncar05134
Legionellosis
ncar05166
Human T-cell leukemia virus 1 infection
ncar05169
Epstein-Barr virus infection
ncar05200
Pathways in cancer
ncar05203
Viral carcinogenesis
ncar05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124985379
04064 NF-kappa B signaling pathway
124985379
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
124985379
09158 Development and regeneration
04380 Osteoclast differentiation
124985379
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124985379
05203 Viral carcinogenesis
124985379
09162 Cancer: specific types
05224 Breast cancer
124985379
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
124985379
05169 Epstein-Barr virus infection
124985379
09171 Infectious disease: bacterial
05134 Legionellosis
124985379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124985379
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
124985379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
124985379
NCBI-ProteinID:
XP_047410011
EnsemblRapid:
ENSSCRG00010012585
LinkDB
All DBs
Position
5:150908987..150916919
Genome browser
AA seq
920 aa
AA seq
DB search
MDSCYDPGLDGIAEYDDFKFSPSIVEPKEPVPETANGPYLVIVEQPKQRGFRFRYGCEGP
SHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSELGVC
AVSVGPKDMTAQFNNLGVLHVTKKNMMEIMIQKLQRQRLRSRPHGLTEAERRELEQEAKE
LKKVMDLSIVRLRFSAFLRDSDGSFSLALKPVISQPIHDSKSPGASNLKISRMDKTAGSV
RGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIE
RPVTVFLQLKRKRGGDVSDSKQFTYYPLVEGGTGLEDPIGLGWAGGFPGDKEEVQRKRRK
ALPTFSQPFGGGSHMGGGSGGSAGGYGGAGGGGGSLGFFPSSLAYSPYQSGAAPMGCYPG
GGGGAQMASSAPRMDAGEEAAEPSAPPGNPKGEPQAPDALHLAREYNARLFGLTQRSARA
LLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIAHVIYHAQHLGVV
NLTNHLHQTPLHLAVITGQTRVVSFLLQVGADPAMLDRHGDSAMHLALRAGAGAPNLLHA
LLQSGAPTVSQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEAAERQGGRTALHL
ATEMEELGLVTHLVTKLHANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEE
PLCPLPSPPTSGSDSDSEGPERDIQSKFQGHKPLDLTRSTKVKNLLLNAAQNTTEPPLTP
PSPAGPGLSLGETTLQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRKTASPSGSLLRS
YKLAGGDLSGLLEALSDMGLDEGVRLLRGPETRDKLPSTAEVKEDSAYGSQSVEQEAEKL
GPPPEPPGGLCHGHTQPQVH
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggacagttgctacgacccaggtctggatggcattgctgaatatgatgatttcaaattc
agtccctccattgtggaacccaaggagccggtccctgagacagctaatggcccctacctg
gtgattgtggaacagcctaagcaacgaggcttccgatttcgatatggctgtgaaggtccc
tcccacggaggcctgccaggtgcctccagtgagaagggtcgtaaaacctatcccactgtc
aagatctgtaactacgagggtcctgccaagattgaggtggacctggtaacacacagtgac
ccacctcgtgctcatgcccacagcctggtgggcaagcagtgctcagagctgggggtctgt
gccgtctctgtggggcccaaggacatgactgcccaattcaataacctgggtgtgctgcat
gtgaccaagaagaatatgatggaaattatgatacaaaaacttcagaggcaaaggctccgc
tccaggccccacggtcttacagaggccgagcggcgggagctggagcaggaggccaaagag
ctgaagaaagtgatggatctgagtattgtgcgtctgcgcttctctgccttccttcgagac
agcgacggctccttttccctggccctgaagccagttatctcccagcccatccatgacagt
aagtctccaggggcctcaaacctgaagatttctcgaatggacaagacagcaggctctgta
cggggtggagatgaagtttatctgctttgtgacaaggtgcagaaagatgacattgaagtt
cggttctatgaggatgatgaaaacggatggcaagcctttggggacttctctcccacagat
gttcataaacagtatgccattgtgttccggacacccccctatcacaagatgaagattgag
cggcctgtaacggtgttcctacaactgaaacgcaagcgaggaggggatgtctctgactcc
aaacagttcacctattatcctctggtggaaggtggaactgggcttgaggatcccataggg
ctgggctgggctggaggtttcccaggagacaaggaggaggtgcagcggaagcggaggaag
gccttgcctaccttctcccagccctttggaggtggctcgcatatgggaggaggctctggg
ggctctgctgggggttatggaggagctggaggaggaggtggcagcctcggctttttcccc
tcctccttggcctacagcccctaccagtccggcgcggcaccaatgggctgctacccgggc
ggcgggggcggagcgcagatggcctcctcggcgccccgcatggatgctggggaggaagca
gcagagcccagcgcgccccccgggaaccccaagggcgaaccacaggctcccgacgcgctg
catctagctcgggagtacaacgcgcgcctgttcggcctgacgcagcgcagcgcccgagcc
ttgctagactacggcgtcacggcagacgcgcgcgcgcttctggcaggacagcgccacctg
ctgacggctcaggacgagaacggggacacgccgctgcacctggccatcatccacgggcag
accagtgtcattgagcagatagcccatgtcatctaccatgcccagcacctcggtgttgtc
aacctcaccaaccacctgcaccagacacccctgcacctggcagtgataactggacagaca
agggtggtgagctttctgctgcaggtgggtgcagaccctgcaatgctggatcggcatgga
gactcggccatgcacctggcactgcgggcaggtgctggagccccaaacctgttgcatgca
ctgctacaaagtggagctcccactgtgtcccagctgttacatatgcctgactttgagggc
ctgtaccctgtacacctggcagttcgtgcccgaagccctgagtgcctggatctgctggtg
gacagtggagcagaagtggaggctgcagagcggcaggggggccgaacagcactgcatcta
gccacagagatggaggagctggggctggttacacatctggtcaccaagctccatgccaat
gtgaacgcccgcacctttgccggaaacacacctctacacctggcagctggactgggatcc
ccaacccttacccgcctccttctaaaggctggtgctgacatccacgcagagaatgaggag
cctctgtgcccactgccttcacctcccacctctgggagtgattcagattccgaggggcct
gagagggacatccagagcaaattccagggccacaagcctcttgacctcactcgcagcacc
aaggtgaagaacttgctgctaaatgctgctcagaacaccacggagccccccctgacccct
cccagtcctgcagggccagggctgtcactcggagagacaaccttgcagaatctggagcag
ctgctagatgggccagaagcccagggtagctgggcagagctggcagagcggctagggctg
cgcagtctagtggacacataccggaagacagcttcacccagcggcagcctcctgcgcagt
tacaagctggctggtggagacttgtcaggtctgctggaagccctgtctgacatgggtcta
gatgaaggagtgcgactgctgcgaggtcctgagacccgagacaagctgcccagcacagca
gaagtgaaggaagacagtgcatatgggagccagtcagtggaacaggaggcagagaaactg
ggcccaccccctgagccaccaggagggctctgccatgggcacacccagcctcaggtgcac
tga
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