Sciurus carolinensis (gray squirrel): 124985867
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Entry
124985867 CDS
T08117
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124985867
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124985867
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
124985867
NCBI-ProteinID:
XP_047410448
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Position
5:complement(1604416..1605588)
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AA seq
390 aa
AA seq
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MYSMMMETDLHSPGGAQAPTNLSGPAGTGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVW
SRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGY
AHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHAHPH
NPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAA
AAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAA
AAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggaaaccgacctacactcgccgggcggcgcccaggccccgacg
aacctctcgggcccggccgggacaggcggcggaggcggagggggcggcggaggtggcggc
gggggcgccaaggccaaccaggaccgggtcaaacggcccatgaacgccttcatggtgtgg
tcccgcgggcagcggcgcaaaatggcccaggagaatcccaaaatgcacaactcggagatc
agcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaagcggccgttcatc
gacgaggccaagaggctccgcgcgctgcacatgaaggagcacccggattacaagtaccgg
ccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctggccggggggctg
ctggcggccggcgctggcggcggtggtgctgcggtggccatgggcgtgggtgtgggcgtg
ggcgcggcggcggtgggccagcgcctggagagtccgggtggcgcggcgggcggcggctac
gcgcacgtcaacggctgggccaacggcgcctaccctggctcggtggctgcggcggcagcg
gccgcggccatgatgcaggaggcgcagctggcctacgggcagcatcccggcgcgggcggc
gcgcacccgcacgcgcaccccgcgcacccgcacccgcatcacccgcacgcgcacccgcac
aacccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagtcccatctccaac
tcacagggctatatgagcgcctcgccttcgggctacggcggccttccttatggcgccgcg
gccgccgctgccgctgccgcgggcggcgcgcaccagaactcggcagtggcggcggcggct
gccgccgctgctgcgtcgtcgggcgccctgggtgcgctgggctcgctggtcaagtcagag
ccgagcggcagcccgccggccccagcacactcgcgggcaccgtgccccggggacttgcgg
gagatgatcagcatgtacttgcctgccggcgagggtggcgacccggcggcggccgcggcg
gccgcggcgcagagccggctgcactcgctgccccagcactaccagggcgcgggtgcgggc
gtcaatggcaccgtgcccctgacgcacatctag
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