Sciurus carolinensis (gray squirrel): 124986338
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Entry
124986338 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124986338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124986338
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
124986338
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_8
TPR_17
TPR_14
TPR_12
TPR_11
TPR_CcmH_CycH
ANAPC3
CFAP70_mid_TPR
CFAP70_TPR_C
TPR_9
TTC22_N
ARM_TT21_C
Fis1_TPR_C
ARM_TT21_5th
Sel1
TPR_15
TPR_5
CABIN1_N
TPR_30
ARM_TT21_2nd
SNAP
Retrotran_gag_2
VPS18_solenoid_1st
Sey1_3HB
BTAD
DUF6596
TPR_20
Motif
Other DBs
NCBI-GeneID:
124986338
NCBI-ProteinID:
XP_047410706
LinkDB
All DBs
Position
6:complement(79977105..80073864)
Genome browser
AA seq
1576 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPNQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVGRTWHRLIKTRQEEGADNQELHQLWRKLTQLLAESMEDQNNETQQ
LVLTHFENALGLSDKIPSEDHQVLYRHFIQCLSKFPHETARLKXACEGMINIYPTIQYPL
EVLCLHLIESGPLTTEGQQYCCKLVEMNSKSGPGLIGLGIRALQDXKYEDAVKNLTEGLK
ESPLCTTGWYHLSEAQIKMHRLKEAVLSCNQALKNIDNLGVSGGSLYQKNLCLRLKAEAL
IKLSDYESSEEAICSLNQVSDANNIPGLLVLKSLAYLNKGLLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALERDAEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYKDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMEAALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAIAQYQLIIK
KKEDYVPALKGLGECYLMMAKSALVDYLDGKAVDYIEKALEYFTWALQHRADVSCLWKLV
GDACTSLYAVSSSKVNVNILGILLGQKEGKQVLKKTELLHLGGRCYGRALKLMSTSNTWC
DLXINYYRQXQHLAEMGSSMNDLKELLDNSFQCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIQSIQSEQINAVAWTNXGVLYLANETLSRRRIKACKLMVQQAHEAFKMAQ
SLDPSYLMCWIGQALIAETVGSYDTMDLFRHTTELSMHTEGALGYAYWVCTTLQDKSNRE
TELYQYNILQMNAIPAAQVVLCKYVERIQNYAPAFTMLGYLNEHLQLKKEAADAYQRAML
LLQTEEDQDTYNDTVRNYGRLLSSIGEYDKAIQAFKSIPLEELEDIIGFALALFMKGLYK
ESSKAYERALSIVESEQDKAHILTALAITEYKQGKMDVAKSLLFKCSILKEPTIESLQAL
CALGLVMQDATLSKAALNELLKHIKHKDSDYHRCLLTSAIYALQGRSVAVQRQASKAVHS
NPADPALWSFLSRVVAQCAQRNAKGGAVAGTVAHILDSDHGKKALLYTAANQLAMGSSSA
EDEKNIALKTIQKAALLSPGDPAVWAGLMAACYADDKLALVNNTQPKRMDLYLALLSAVS
ASIKGKEFLEKYNQSLEQWSLSQAVTGLIETGRISEAEALCTKNLKSNPDQPAIILLLRQ
VQCKSLLESQKPLPDAVLDELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQ
VASQQGSWSGKLSSLLKLALLALEICMANVSSDHWPSLVQEATTEALKLCFCPLAILLQA
LLQFHRKMGARETRRLLERVVYQPGYPKSIVSAARWYLLRHLYAKNDYELIDVLVNNAET
HRDTRALELNQKLASQ
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacactgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgctgcagagctagaacaacctgatcaggcccaa
ggtgcctataagaaagctgctgaactagaaccaaaccagttactagcttggcaggggtta
gcaagcttgtatgagaagtgtaatcacataaatgctaaggatgacttgccgggtgtttac
cagaaactcctggatctttatgaaagtgttgacaaacagaagtggtgtgatgtctgtaag
aaacttgtggatctctattaccaagaaaagaaacacctagaggtgggtcgaacatggcac
agattgataaagacacgacaagaagaaggtgcagacaaccaggagcttcatcagctatgg
aggaagttgactcagctgctggctgagagtatggaggatcagaataatgaaacccagcaa
ctggtattaactcattttgagaatgcactgggcttgtcagataagattcctagtgaagat
caccaagtactgtataggcatttcattcagtgtttatccaaatttccacatgagactgct
aggttgaagnaggcctgtgaaggaatgataaacatctatcccaccatacaatatccatta
gaagtgctttgtttacatttaattgaatcaggacccttaaccactgaagggcagcagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggcctcattggcttaggcatt
agagcattacaagacnaaaagtatgaagatgctgttaagaatctaacagaagggctaaag
gaaagccccctctgcacaactggatggtatcatctgtctgaagctcaaatcaaaatgcac
agacttaaggaagctgttctttcatgcaatcaagctctgaagaacatagataatcttggt
gtgtctggaggcagtctttatcagaagaacctttgtcttcgtttgaaagcagaagctttg
attaaactctcagattatgagtcttcagaggaagcaatttgttctctgaatcaggtttct
gatgcaaataatatcccaggacttttggttctcaaaagcttggcttatctgaacaaaggt
ttactagatgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggcattgattcattttacaaaaaaggactatctgcaagcagaa
aaatgttttcagagagcacttgaaagagatgctgaagttgctgaatatcattaccagctt
gggttaacatattggttcatgggtgaggaaacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatacatgggcaaagttttctgctatttagga
cattattacaaagatgtagtgggagataaaaaccgagctcgtggatgttacagaaaagct
tttgagttagatgacactgatgcggaatctggagctgcagcagttgacttaagtgtggag
cttgaagatatggaagctgccttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacggcaaaatgggcctggcttcggcgaggactatactatttgaaagctggtcaacat
tcacaagcagtggctgacttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatacttaagcagaggtggctatacaacagccttgaagtcc
ttcacaaaagccagtgagctcaacccagagtccacatacagtgtgtttaaggttgcagca
atacaacaaatcctaggcaagtataaagaggccatagctcaataccagctgattattaaa
aagaaagaagattatgtacctgctttgaaaggtttgggtgaatgctatctcatgatggca
aaatcggctctagtcgattatcttgatggaaaagctgtagactacatagaaaaagccctg
gaatattttacttgggccctgcagcatcgagctgatgtgtcctgcctttggaagctggtt
ggggatgcttgtactagtctgtatgcagtttcatcatctaaagtgaatgttaatatttta
gggatccttctaggtcagaaagaaggaaaacaagtattaaagaaaactgagctcctccat
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gatcttngaattaattattaccgccagncacaacatctagcagaaatgggcagcagcatg
aatgatcttaaagagttgctagacaattcttttcagtgtctgaaaaaggcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtagttgcgtgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatacaatcaatccagtcagaacaaattaat
gctgttgcgtggaccaatntgggagtgttataccttgcaaatgaaacattgagcaggaga
agaataaaagcatgcaagttaatggtccaacaagctcatgaagctttcaaaatggctcag
tcccttgatccatcttatttaatgtgctggattggacaagctcttattgcagagacagtt
ggaagttatgacaccatggatcttttcaggcacactacagaactcagtatgcatactgag
ggagcactaggttatgcatactgggtctgcacaacattgcaagataaaagcaacagagaa
acagagctgtaccagtacaacatcctccagatgaatgctattccagcagcgcaagttgtt
ttgtgtaaatatgtggaaagaattcagaattatgctccagctttcacaatgttgggttat
ttaaatgaacatctacagctgaaaaaggaagcagcagatgcatatcaaagggcaatgttg
ttgttacaaactgaagaagatcaagatacttacaatgatacagtaagaaattatggcaga
ctgttgagttccattggtgaatatgacaaagctatccaggcttttaagtcaatacctctt
gaggagttagaagacatcataggctttgcattggctttatttatgaaggggctatataaa
gagagcagcaaagcctatgaaagagccttgtctattgttgaatcagagcaagacaaagcc
catatcttgacagctctggcaataacagaatataaacaaggaaaaatggatgtagccaag
tcactactattcaaatgctctattttaaaggaaccaaccatagaaagccttcaagccctg
tgtgctctaggattggtaatgcaggatgctacactgtcaaaagcagcacttaatgagtta
ctgaagcacatcaaacacaaagacagtgattatcacaggtgccttcttacttcagcgatt
tatgcactccaaggccgcagtgtggcagtgcaacggcaagcatctaaagctgttcacagt
aacccggctgatcctgctctttggtctttcttatcccgggttgttgctcagtgtgctcaa
cgaaatgcaaagggaggtgctgtagcaggaactgtggctcatattctggactcagatcat
ggaaagaaggcattactgtacactgcagcaaatcagttggcaatggggagcagttcagca
gaagatgaaaaaaatattgcactaaagactattcagaaggcagctctcctttctccaggt
gaccctgctgtctgggctgggctgatggcagcctgttacgctgatgataaactggctcta
gtgaacaacactcagccaaagaggatggatttatacttggcactgttatctgctgtttct
gcttcaattaagggcaaggaatttcttgaaaagtacaaccaatctcttgaacagtggtct
ctctcacaagctgtcactggtctgatagaaacaggaagaatatctgaagctgaagctctc
tgcacaaagaatttaaaaagtaaccccgatcagccagctattatattacttttgagacaa
gttcagtgtaaatcactcctggagtcacaaaagccactcccggatgcagtactcgatgaa
cttcaaaaaacagttatgtctaactcaacttctgttccagcttggcagtggttggcacag
gtgtatcagtctcaaggaatgatgggtgctgcagaaatgtgttacagaaagagtctacaa
gtggcatcccagcagggaagttggagtgggaagctctcgagtctattgaaactagcattg
ctcgccttagaaatctgtatggcgaatgtttccagtgatcactggccatccttggttcaa
gaggctacaaccgaggccttgaaactttgtttctgtccactagctattcttttacaagct
ttgttacaattccaccgcaaaatgggagcaagagagacacggcgacttttggagagagtg
gtatatcaaccaggatatccaaaatctattgtatcagctgctcgttggtacctactgaga
cacctctatgccaaaaatgactatgaactcattgatgtgttggtaaacaatgctgaaact
cacagagatacaagagcattggaactgaatcagaaattggcctcacagtaa
DBGET
integrated database retrieval system
