Sciurus carolinensis (gray squirrel): 124986472
Help
Entry
124986472 CDS
T08117
Name
(RefSeq) protocadherin beta-1
KO
K16494
protocadherin beta
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ncar04515
]
124986472
Cell adhesion molecules [BR:
ncar04515
]
Cadherins
Protocadherins
124986472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Ly49
RibLong
DHHC
PLAC8
Motif
Other DBs
NCBI-GeneID:
124986472
NCBI-ProteinID:
XP_047410781
LinkDB
All DBs
Position
6:99339150..99341606
Genome browser
AA seq
818 aa
AA seq
DB search
MAVARRKPLQNRQVASLFLFWCVSVGGANTIRYSVAEEMESGSFVANVAKDLGLEVGKLV
ARGARLVSEGNKLHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEIVLGEPLQSFRVE
VRVFDINDNAPIFQNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANAYFHL
HTRFRSHGPKYAELVLDKPLDREEQAEVNLTIKAVDGGSPPKSGTAHIRVVVLDVNDHVP
QFSRLVYRAQVPENSASGSLVVTVTATDLDEGTNKEITYSLAQNPEAILQTFQIDSETGE
VRLRGPLDFEATETYDIDVRATDGGGLSAHSKVLVEVMDVNDNPPEVMVSSVSSPLPEDS
PLQTVVALFTVRDRDIRVGGKITCFLREDFPFVVKPTFRNSYSLVTDRSLDREAVSGYNI
TLVAMDTGPPNLSTETVIEVLISDINDNPPMFQKDSYILTVRENNSPAVFIGKVHAEDLD
LGENAQVTYSLLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFL
TLSSQVSVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQN
SWLSYHLLKATDLGLFSVQSQNGEIRTLRQISERDPMMQKLTILVQDHGQPALSTTASLN
ILLVDGFSEPYLRFWDPSKDSRKVNSTTKYLVISLAVLSFLFLLSVTVIFIIHIYQKIKH
RDKFTIQEHFFDDCNFPNNLVQGEGNGSLSQPCPYEICSASGTGNSEFRFLKRFMPNFPF
PHATGEVKTEDRSSLPTDSNRNRSRRSDDHNQVSDDYM
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgcgcgcagaaaacctttgcaaaacaggcaagtggcgtctcttttccttttt
tggtgtgtatctgtggggggtgcaaacaccatccgctattcagtggcggaggaaatggag
agcggctcatttgtagctaatgtggctaaggacttagggctggaggtggggaagctggtt
gcgcgaggggcgcggctagtttccgagggcaacaagctgcatttccggcttcaccgcaag
actggagatttattcgtaaaggagaaactagatcgggagtcactctgtggtaaagctgac
ccatgcgttctgcactttgaaattgtcctaggagagccgctgcagtccttccgtgtggaa
gtcagggtatttgatatcaatgacaatgccccaattttccaaaacaaggagccactttta
aagattccggagagcactcctttgggttcacgttttcctctgcagagcgctcaggacctg
gacgtgggccttaacggactccaaaactacaccctaagcgccaacgcatattttcacctg
cacacccgcttccggagccacggacccaaatatgccgagttggtgttggataaacctttg
gatagagaggaacaggctgaagttaacctaacaattaaggcggtggacggcgggtccccg
cccaagtctggcaccgcccacattcgcgtggtggttctggatgtcaacgaccacgtgcct
cagttctcacgattggtgtatcgcgctcaggtaccggagaatagtgccagtggttcttta
gtggtcacagtgactgccacggatctagatgagggcaccaacaaggagataacttactct
ttagctcaaaacccagaagcaattcttcagacgtttcagattgattctgagactggagag
gttcgactccgagggcccctagattttgaagctacagaaacatatgacattgatgttcga
gctacggatggaggaggcctctctgcccacagcaaagtccttgtggaagtgatggatgta
aacgacaatcctcctgaagtgatggtctcctctgtgtctagccctctgcctgaggactcc
ccgctacagactgtggtggccctctttactgtccgagaccgggacatccgagtgggagga
aaaatcacttgcttcctcagagaagactttccctttgtagtgaagcctacattccgaaat
tcttattcattggtgactgacagaagcttggatcgtgaggctgtctcaggctataatatc
actcttgttgccatggacaccggaccacccaacctgtccacagagactgtgatagaggtg
ctaatatctgacattaatgacaatcctccaatgtttcagaaagattcctacatcttgact
gttcgagaaaacaacagtcctgcagtttttattggtaaagtccatgctgaggatctagat
ttgggtgagaatgcccaagtgacatattctctgttgcctccaaaaagtggggatctatca
gtttttgcttacatctccataaattcagacaatgggaagctctatgctttgagaactatg
gattatgaagccattcaagattttcagtttgtggtaaaggcaactgatgggggcttcctg
acactgagtagccaagtttctgttagagtggttgtcctggatgacaatgacaaccgtcca
atgatcttgtacccactacagaatggtactttgccctgcaatgacctggtgcccaggtct
gcagaggcaggctatctggtgaccaaagtggtggctgttgatggtgattcaggtcaaaat
tcttggctttcataccatctacttaaagccactgaccttgggttattctctgttcagtca
caaaatggggaaatccgaacattgaggcagatatctgagagagaccccatgatgcagaaa
ctgactattcttgttcaggatcatggtcaaccagctctttccactactgcctcactcaat
atcctgctggtagatggcttttcagagccctatctgaggttctgggatccatccaaggat
tctagaaaggtaaattcaaccactaaatatttggttatttctctggctgtgctttccttt
ctgtttcttctctctgttacagtgatcttcattattcacatctaccagaagattaaacac
agagacaagttcacaattcaagagcatttctttgatgactgtaacttccctaacaacctg
gtgcaaggagaaggcaatggatccttatcccagccttgtccatatgaaatatgctcagcc
tctggcactggcaatagtgagttccggtttcttaagcgctttatgcccaactttcctttc
cctcacgccactggagaggtgaaaacagaggacagatccagtttaccaacagattctaat
aggaataggtctcggaggtcagatgaccataaccaggtatctgatgactatatgtag
DBGET
integrated database retrieval system
