Sciurus carolinensis (gray squirrel): 124986565
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Entry
124986565 CDS
T08117
Name
(RefSeq) slit homolog 3 protein isoform X1
KO
K06850
slit 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
124986565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124986565
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Axon guidance molecules
124986565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
LRR_5
hEGF
Laminin_G_2
LRRNT
LRR_9
Laminin_G_1
LRRCT
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
LRR_NXF1-5
JAG1-like_EGF2
EGF_3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
124986565
NCBI-ProteinID:
XP_047410929
LinkDB
All DBs
Position
6:complement(156304768..156884265)
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AA seq
1665 aa
AA seq
DB search
MERANAGQLAWPPRTPAAAAARQSPARSPTSPGAVPHRARPSSPTRRAARAARTRAKGRP
APGHLERCAAGHRWPRRWSCCRRRPARPAPPAPRAPERRARPSSAPTPPPAPRPPALPAR
LLALPASCPAEAASFGRGPLRTMAPGRSGAGAAVRARLALALALASVLSWPPAVACPTKC
TCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVS
IIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGVPRKAFRGIAD
VKNLQLDNNRISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLY
CDCHLAWLSDWLRQRRTIGQFTLCMAPVHLRGFNVADVQKKEYVCSGSHSEAPSCTANSL
SCPPSCTCSNNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIRSIPAGAFTQYKKLKRIDI
SKNQISDIAPDAFQGLKSLTSLVLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNT
FQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLAEYLQDNPIE
TSGARCSSPRRLANKRIGQTKSKKFRCSGSEDYRSRLSSECFMDLACPERCRCEGTIVDC
SSQKLARIPSHLPEHTTDLRLNDNEISVLEATGIFKKLPNLRKINLSNNKIKEVREGAFD
GAAGVQELMLTGNQLEAAHGRMFRGLSGLKTLMLRSNLISCVGNDTFAGLSSVRLLSLYD
NRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGRWLRKRRVVSGNPRCQKPFFLKE
IPIQDVAIQDFTCDGNEESSCLLSPRCPEQCTCLETVVRCSNKGLRALPKGVPKDTTELY
LEGNHLTAVPRELSALRHLTLIDLSNNSIGMLTNFTFSNMSHLSTLILSYNRLRCIPVHA
FVGLRSLRVLTLHGNDISTVPEGSFNDLTSLSHLALGTNPLHCDCNLRWLSEWVKAGYKE
PGIARCSSPESMADRLLLTTPTHRFQCKGPVDINIAAKCNACLSSPCKNNGTCSQDPVEQ
YRCTCPYSYKGKDCTVPINTCIQNPCQHGGTCHLSESHKEGFSCSCPLGFEGQRCEVNPD
DCEDNDCENNATCVDGVNNYACVCPPNFTGELCDEVIDHCVPEMNLCQHEAKCVSLDKGF
RCECVPGYSGKLCETDNDDCAAHKCRHGAQCVDAVNGYTCICPQGFSGLFCEHPPPMVLL
QTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRP
QANISLQVATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQF
HSVELVMLNQTLNLVVDKGAPKSLGKLQKQPAVGINSPLYLGGIPTSSGLSALRQGADRP
LGGFHGCIHEVRINNELQDFKALPPQSPGVSPGCKSCTVCRHGLCRSVEKDSMVCECHPG
WTGPLCDQEARDPCLGHSCNHGKCVATGSSYVCKCAEGYGGALCDHKNDSANACSAFKCH
HGQCHISDQGQPRCLCQPGFSGEHCEQESPCRGEVVREAIRRQKGYASCATASKVPVMEC
RGGCGAQCCRPTRSKRRKYVFQCADGSSFVEEVERHLECGCHACS
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggagagagcgaacgccggccagctcgcctggccgccccgtaccccggccgccgccgcc
gcacgccagagcccagcccggagcccgacctccccgggcgccgtgccccaccgcgctcgc
cccagctccccgacccggcgcgcagcccgagcggcccgcacgcgggccaagggacgcccg
gcacctgggcacttggagcgatgcgcggcggggcaccgctggccccgccgatggagctgc
tgccgccgccgcccggcgcgccctgctccgcccgcgccccgtgcgcctgagcgccgcgct
cgcccctcctccgcgccaactccgccgcccgctcccaggccgcccgcgctccccgcgcgc
ctgctcgcgctccccgcgtcctgccccgccgaggcagcctcctttgggcgcgggcccctg
cgcaccatggcccccgggcgctcaggggccggcgccgctgtgcgcgcccgcctggcgctg
gccttggcgctggcgagcgtcctgagctggccccctgccgtcgcctgccccaccaagtgt
acctgctccgccgccagcgtggactgccacggtctgggcctacgagcggttccccggggc
atcccccgcaacgccgagcgccttgacctggacagaaataatatcaccaggatcaccaag
atggactttgctgggctaaagaacctccgagtattgcatctggaagacaaccaggtcagc
atcatcgagagaggcgccttccaggatctgaagcagctggagcgattgcgtctcaataag
aataagctccaggtccttccagaattgcttttccagagcacaccgaagctcaccagacta
gatctgagtgaaaaccagatccagggggtcccgaggaaggcgttccgcggcatcgccgac
gtgaagaatctgcaactggataacaatcgcatcagctgcattgaagatggagccttccga
gcgctgcgcgacctggagatcctcaccctcaataacaacaacatcagccgcatcctggtc
acgagcttcaaccacatgccgaagatccggactctgcgtcttcactccaaccacctgtac
tgcgactgccacctggcctggctctcggattggctgcgccagcggcggacaattggccag
ttcaccctctgcatggctcctgtgcacctgaggggcttcaacgtggcagacgtgcagaaa
aaggagtacgtgtgttcaggttcccactcggaggcgccctcctgcactgccaactccctc
tcctgccctccctcctgcacctgcagcaacaacatcgtggactgccgggggaaaggcctg
acggagatccccgccaacctgcccgagggcatcgtggagatacgtctagaacagaattcc
atcagatccatccctgcaggagccttcacccagtacaagaagctgaagcgaatagacatc
agcaagaatcagatatcagacatcgctccagacgccttccagggcctgaagtcgctcaca
tcgctggtactatacgggaacaagatcactgagattgccaagggactgttcgatggactg
gtgtccttacagctgctcctcctcaatgccaacaagatcaactgcctgcgggtgaacacc
ttccaggacctgcagaacctaaacctgctctccctctacgacaacaagctgcagaccatc
agcaaggggctcttcgcgcctctgcagtccatccagacactccacttagcccaaaacccg
tttgtgtgcgactgccacttgaagtggctggccgagtacctccaggacaaccccatcgag
acgagcggggcccgctgcagcagcccgcgccggctggccaacaagcgcatcggccagacc
aagagcaagaagttccgctgctcaggctccgaggattaccgcagcaggttgagcagcgag
tgcttcatggacctcgcgtgcccggagaggtgccgctgtgaggggaccatcgtggactgt
tccagccagaagctggcccgcatcccgagccacctgcccgagcacaccaccgacctgcga
ctgaacgacaatgagatttcggtgctggaggccacggggatcttcaagaagctgcccaac
ctgcggaaaataaacctgagcaacaacaagatcaaggaggttcgagagggcgccttcgat
ggggcggccggcgtgcaggagctgatgctgacggggaaccagctggaggccgcgcacggg
cgcatgttccgcggcctcagcggcctcaagaccctgatgctgaggagcaacctgatcagc
tgcgtgggcaacgacaccttcgcaggcctgagttctgtgcggctgctgtccctctatgac
aaccggatcaccaccatcacccccggggccttcaccacactggtctccctgtccaccata
aacctcctgtccaaccccttcaactgcaactgccacctggcctggctcggcaggtggctg
aggaagaggcgggtggtcagcgggaaccccaggtgccagaagcccttcttcctcaaggag
atccccatccaggacgtggccatccaggacttcacctgtgacggcaacgaagagagcagc
tgcctgctgagcccgcgctgcccagagcagtgcacctgcctggagacggtggtgcggtgc
agcaacaagggcctccgcgccctccccaaaggcgtgcccaaggacacgactgagctgtac
ctggaaggaaaccacttgacagctgtgcccagggagctgtctgccctccgacacctgacg
ctcattgacctgagcaacaacagcatcggcatgctgaccaatttcaccttcagtaacatg
tcccacctctctactctgatcctgagttacaaccggctgaggtgcatccctgtccatgcc
ttcgtcgggctgagatctctccgcgtgctaaccctccatggcaacgacatctccactgtt
cccgaaggctccttcaatgacctgacatccctttcccacctggcactgggaaccaacccg
ctgcactgtgactgcaatctccgttggttgtcagagtgggtgaaggccgggtacaaggaa
cccggcatcgcccgctgcagcagccccgagtccatggctgacagactcttgctcaccacc
cccacccaccggttccagtgcaaaggtccagtggatatcaacatcgcggccaagtgcaac
gcctgcctctccagcccgtgcaagaacaatggcacgtgcagtcaggaccctgtggagcag
taccgctgcacctgcccctacagctacaagggcaaggactgcacggtgcccatcaacacc
tgcatccagaacccctgccagcacggaggcacctgccacctgagcgagagccacaaggag
ggattcagctgctcctgccctctgggcttcgaggggcagcgctgcgaggtcaaccccgac
gactgcgaggacaacgactgcgagaacaacgccacctgcgtggacggggtcaacaactac
gcctgcgtgtgcccccccaacttcacaggtgagctgtgtgatgaggtgattgaccattgt
gtgcctgagatgaacctctgtcagcacgaggccaagtgcgtctccctggacaaaggattc
agatgcgaatgcgtccctggctacagcgggaagctctgtgagacagacaatgacgactgc
gcagctcacaagtgccgccacggggcccagtgtgtggatgcagtcaatggctacacctgc
atctgcccccagggcttcagtgggctcttctgcgagcaccccccgcccatggttctgctg
cagaccagcccctgtgaccagtacgagtgccagaacggagcccagtgcattgtggtgcag
caggagcccacctgccgctgtcccccaggctttgctggccccagatgcgagaagctcatc
accgtgaacttcgtgggcaaagactcctatgtggaactggcctccgccaaggtccggccc
caggccaacatctccctgcaggtggccacggacaaggacaacggcatccttctctacaag
ggagacaacgatcccctggcgctggagctgtaccagggccacgtgaggctggtgtatgac
agcctgagctccccgcccaccacggtgtacagtgtggagactgtgaatgatgggcagttt
cacagcgtggagctggtgatgctaaaccagaccttgaacctggtggtagacaaaggagcc
ccgaagagcctggggaagctccagaagcagcccgccgtgggcatcaacagccccctctac
cttggaggcatccccacctccagcggcctctcggccttgcgccagggcgcagaccgaccg
ctgggtggcttccacggctgcatccacgaggtgcgcatcaacaacgagctgcaggacttc
aaggccctcccgccacagtccccaggggtctcgccaggctgcaagtcctgcaccgtgtgc
cggcacggcctgtgccgctccgtggagaaggacagcatggtgtgtgagtgccacccgggc
tggaccggcccgctgtgcgaccaggaagcccgggacccctgcctcggccacagctgcaac
catggaaaatgtgtggcgactggaagctcgtacgtgtgcaagtgtgccgagggctatgga
ggggctctgtgtgaccacaagaacgactccgccaatgcctgctcagccttcaagtgccac
cacgggcagtgccacatctcagaccaagggcagccccgctgcctgtgccagccgggcttc
agtggggagcactgtgagcaagagagcccatgccggggggaggtggtgcgagaggccatc
cgccgccagaaaggctacgcgtcctgtgccacggcctccaaggtgccggtcatggagtgt
cgcgggggctgcggggcgcagtgctgccggcccacgcgcagcaagcggcggaaatacgtc
ttccagtgcgcggacggctcctcgttcgtggaggaggtggagagacacctggagtgcggc
tgccacgcgtgctcctga
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integrated database retrieval system
